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    LOC120023841 serine/threonine/tyrosine-interacting protein-like [ Salvelinus namaycush (lake trout) ]

    Gene ID: 120023841, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC120023841
    Gene description
    serine/threonine/tyrosine-interacting protein-like
    See related
    EnsemblRapid:ENSSNMG00000020602
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Salvelinus namaycush
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salvelinus
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    Genomic context

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    See LOC120023841 in Genome Data Viewer
    Location:
    chromosome: 28
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    100 current SaNama_1.0 (GCF_016432855.1) 28 NC_052334.1 (44119887..44139282)

    Chromosome 28 - NC_052334.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC120023422 Neighboring gene FOS like 2, AP-1 transcription factor subunit Neighboring gene uncharacterized LOC120023843 Neighboring gene glucosamine-phosphate N-acetyltransferase 1 Neighboring gene suppressor of cytokine signaling 4-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_052334.1 Chromosome 28 Reference SaNama_1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables F-box domain binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein tyrosine/serine/threonine phosphatase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in negative regulation of SCF-dependent proteasomal ubiquitin-dependent catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in negative regulation of protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein dephosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of ERK1 and ERK2 cascade IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    serine/threonine/tyrosine-interacting protein-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Salvelinus namaycush Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference SaNama_1.0 Primary Assembly

    Genomic

    1. NC_052334.1 Reference SaNama_1.0 Primary Assembly

      Range
      44119887..44139282
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038967958.1 → XP_038823886.1  serine/threonine/tyrosine-interacting protein-like isoform X1

      UniProtKB/TrEMBL
      A0A8U0PDK0
      Related
      ENSSNMP00000027777.1, ENSSNMT00000031679.1
      Conserved Domains (1) summary
      cd14522
      Location:26 → 175
      DSP_STYX; dual specificity phosphatase-like domain of serine/threonine/tyrosine-interacting protein

    2. XM_038967959.1 → XP_038823887.1  serine/threonine/tyrosine-interacting protein-like isoform X2

      UniProtKB/TrEMBL
      A0A8U0PFE9
      Conserved Domains (1) summary
      cd14522
      Location:1 → 150
      DSP_STYX; dual specificity phosphatase-like domain of serine/threonine/tyrosine-interacting protein
    Nucleotide Protein
    Heading Accession and Version

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    Molecular Biology Databases