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    LOC120049854 regulator of nonsense transcripts 2-like [ Salvelinus namaycush (lake trout) ]

    Gene ID: 120049854, updated on 25-Jan-2024

    Summary

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    Gene symbol
    LOC120049854
    Gene description
    regulator of nonsense transcripts 2-like
    See related
    EnsemblRapid:ENSSNMG00000015198
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Salvelinus namaycush
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salvelinus
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    Genomic context

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    See LOC120049854 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    24
    Annotation release Status Assembly Chr Location
    100 current SaNama_1.0 (GCF_016432855.1) 6 NC_052312.1 (30454820..30478175, complement)

    Chromosome 6 - NC_052312.1Genomic Context describing neighboring genes Neighboring gene serine-threonine kinase receptor-associated protein-like Neighboring gene protein transport protein SEC31-like Neighboring gene calumenin-A-like Neighboring gene putative violet-sensitive opsin

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_052312.1 Chromosome 6 Reference SaNama_1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of exon-exon junction complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    regulator of nonsense transcripts 2-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Salvelinus namaycush Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference SaNama_1.0 Primary Assembly

    Genomic

    1. NC_052312.1 Reference SaNama_1.0 Primary Assembly

      Range
      30454820..30478175 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038996320.1 → XP_038852248.1  regulator of nonsense transcripts 2-like isoform X6

      UniProtKB/TrEMBL
      A0A8U0QZP8
      Conserved Domains (2) summary
      smart00543
      Location:769 → 982
      MIF4G; Middle domain of eukaryotic initiation factor 4G (eIF4G)
      pfam04050
      Location:1098 → 1222
      Upf2; Up-frameshift suppressor 2

    2. XM_038996319.1 → XP_038852247.1  regulator of nonsense transcripts 2-like isoform X5

      UniProtKB/TrEMBL
      A0A8U0R113
      Conserved Domains (2) summary
      smart00543
      Location:769 → 982
      MIF4G; Middle domain of eukaryotic initiation factor 4G (eIF4G)
      pfam04050
      Location:1098 → 1223
      Upf2; Up-frameshift suppressor 2

    3. XM_038996318.1 → XP_038852246.1  regulator of nonsense transcripts 2-like isoform X4

      UniProtKB/TrEMBL
      A0A8U0R129
      Conserved Domains (2) summary
      smart00543
      Location:773 → 986
      MIF4G; Middle domain of eukaryotic initiation factor 4G (eIF4G)
      pfam04050
      Location:1102 → 1226
      Upf2; Up-frameshift suppressor 2

    4. XM_038996316.1 → XP_038852244.1  regulator of nonsense transcripts 2-like isoform X3

      UniProtKB/TrEMBL
      A0A8U0R2C2
      Related
      ENSSNMP00000019310.1, ENSSNMT00000022714.1
      Conserved Domains (2) summary
      smart00543
      Location:773 → 986
      MIF4G; Middle domain of eukaryotic initiation factor 4G (eIF4G)
      pfam04050
      Location:1102 → 1227
      Upf2; Up-frameshift suppressor 2

    5. XM_038996313.1 → XP_038852241.1  regulator of nonsense transcripts 2-like isoform X1

      UniProtKB/TrEMBL
      A0A8U0QZ86
      Conserved Domains (2) summary
      smart00543
      Location:773 → 986
      MIF4G; Middle domain of eukaryotic initiation factor 4G (eIF4G)
      pfam04050
      Location:1102 → 1227
      Upf2; Up-frameshift suppressor 2

    6. XM_038996317.1 → XP_038852245.1  regulator of nonsense transcripts 2-like isoform X2

      UniProtKB/TrEMBL
      A0A8U0UGX2
      Related
      ENSSNMP00000019304.1, ENSSNMT00000022708.1
      Conserved Domains (2) summary
      smart00543
      Location:773 → 986
      MIF4G; Middle domain of eukaryotic initiation factor 4G (eIF4G)
      pfam04050
      Location:1102 → 1227
      Upf2; Up-frameshift suppressor 2

    7. XM_038996315.1 → XP_038852243.1  regulator of nonsense transcripts 2-like isoform X2

      UniProtKB/TrEMBL
      A0A8U0UGX2
      Conserved Domains (2) summary
      smart00543
      Location:773 → 986
      MIF4G; Middle domain of eukaryotic initiation factor 4G (eIF4G)
      pfam04050
      Location:1102 → 1227
      Upf2; Up-frameshift suppressor 2

    8. XM_038996314.1 → XP_038852242.1  regulator of nonsense transcripts 2-like isoform X1

      UniProtKB/TrEMBL
      A0A8U0QZ86
      Conserved Domains (2) summary
      smart00543
      Location:773 → 986
      MIF4G; Middle domain of eukaryotic initiation factor 4G (eIF4G)
      pfam04050
      Location:1102 → 1227
      Upf2; Up-frameshift suppressor 2
    Nucleotide Protein
    Heading Accession and Version

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