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    LOC120114572 lysine-specific demethylase REF6-like [ Hibiscus syriacus ]

    Gene ID: 120114572, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC120114572
    Gene description
    lysine-specific demethylase REF6-like
    Locus tag
    F3Y22_tig00000003pilonHSYRG00161
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Hibiscus syriacus
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Hibiscus
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    Genomic context

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    See LOC120114572 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    100 current ASM638163v2 (GCF_006381635.1) Unplaced Scaffold NW_024061753.1 (1863819..1871934)

    NW_024061753.1Genomic Context describing neighboring genes Neighboring gene pentatricopeptide repeat-containing protein At5g50280, chloroplastic-like Neighboring gene MA3 DOMAIN-CONTAINING TRANSLATION REGULATORY FACTOR 1-like Neighboring gene uncharacterized LOC120218476 Neighboring gene 4-coumarate--CoA ligase-like 5

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_024061753 Unplaced Scaffold Reference ASM638163v2 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables histone H3K4me/H3K4me2/H3K4me3 demethylase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in chromatin remodeling IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    lysine-specific demethylase REF6-like
    Names
    Lysine-specific demethylase REF6

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Hibiscus syriacus Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM638163v2 Primary Assembly

    Genomic

    1. NW_024061753.1 Reference ASM638163v2 Primary Assembly

      Range
      1863819..1871934
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039135455.1 → XP_038991386.1  lysine-specific demethylase REF6-like isoform X1

      UniProtKB/TrEMBL
      A0A6A3D4B5
      Conserved Domains (3) summary
      smart00545
      Location:21 → 61
      JmjN; Small domain found in the jumonji family of transcription factors
      sd00017
      Location:1494 → 1516
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam02373
      Location:222 → 340
      JmjC; JmjC domain, hydroxylase

    2. XM_039135491.1 → XP_038991422.1  lysine-specific demethylase REF6-like isoform X2

      Conserved Domains (2) summary
      sd00017
      Location:1200 → 1222
      ZF_C2H2; C2H2 Zn finger [structural motif]
      cl40423
      Location:1 → 46
      cupin_RmlC-like; RmlC-like cupin superfamily
    Nucleotide Protein
    Heading Accession and Version

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