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    LOC120198655 U-box domain-containing protein 5-like [ Hibiscus syriacus ]

    Gene ID: 120198655, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC120198655
    Gene description
    U-box domain-containing protein 5-like
    Locus tag
    F3Y22_tig00117056pilonHSYRG00681
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Hibiscus syriacus
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Hibiscus
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    Genomic context

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    See LOC120198655 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    100 current ASM638163v2 (GCF_006381635.1) Unplaced Scaffold NW_024063539.1 (4413110..4416535)

    NW_024063539.1Genomic Context describing neighboring genes Neighboring gene putative F-box protein At1g47390 Neighboring gene zinc-finger homeodomain protein 5-like Neighboring gene uncharacterized LOC120197942 Neighboring gene uncharacterized LOC120197943 Neighboring gene phenylcoumaran benzylic ether reductase TP7-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_024063539 Unplaced Scaffold Reference ASM638163v2 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ubiquitin-protein transferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cell surface receptor signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein ubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    U-box domain-containing protein 5-like
    Names
    Pentatricopeptide repeat-containing protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Hibiscus syriacus Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM638163v2 Primary Assembly

    Genomic

    1. NW_024063539.1 Reference ASM638163v2 Primary Assembly

      Range
      4413110..4416535
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039199960.1 → XP_039055891.1  U-box domain-containing protein 5-like

      UniProtKB/TrEMBL
      A0A6A2WDA6
      Conserved Domains (2) summary
      smart00504
      Location:254 → 316
      Ubox; Modified RING finger domain
      cl05301
      Location:14 → 106
      MLKL_NTD; N-terminal domain of mixed lineage kinase domain-like protein (MLKL) and similar proteins
    Nucleotide Protein
    Heading Accession and Version

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