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    HPGD 15-hydroxyprostaglandin dehydrogenase [ Passer montanus (Eurasian tree sparrow) ]

    Gene ID: 120497956, updated on 3-Aug-2024

    Summary

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    Gene symbol
    HPGD
    Gene description
    15-hydroxyprostaglandin dehydrogenase
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Passer montanus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Passeroidea; Passeridae; Passer
    Orthologs
    human mouse all
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    Genomic context

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    See HPGD in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    100 current ASM1480565v1 (GCF_014805655.1) Unplaced Scaffold NW_024360941.1 (8632916..8657125, complement)

    NW_024360941.1Genomic Context describing neighboring genes Neighboring gene F-box protein 8 Neighboring gene centrosomal protein 44 Neighboring gene uncharacterized LOC120497957 Neighboring gene glycine receptor alpha 3

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_024360941 Unplaced Scaffold Reference ASM1480565v1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    15-hydroxyprostaglandin dehydrogenase [NAD(+)]

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Passer montanus Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM1480565v1 Primary Assembly

    Genomic

    1. NW_024360941.1 Reference ASM1480565v1 Primary Assembly

      Range
      8632916..8657125 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039700129.1 → XP_039556063.1  15-hydroxyprostaglandin dehydrogenase [NAD(+)] isoform X1

      Conserved Domains (1) summary
      cd05323
      Location:6 → 254
      ADH_SDR_c_like; insect type alcohol dehydrogenase (ADH)-like, classical (c) SDRs

    2. XM_039700131.1 → XP_039556065.1  15-hydroxyprostaglandin dehydrogenase [NAD(+)] isoform X3

      Conserved Domains (1) summary
      cl21454
      Location:1 → 133
      NADB_Rossmann; Rossmann-fold NAD(P)(+)-binding proteins

    3. XM_039700130.1 → XP_039556064.1  15-hydroxyprostaglandin dehydrogenase [NAD(+)] isoform X2

      Conserved Domains (1) summary
      cl21454
      Location:6 → 143
      NADB_Rossmann; Rossmann-fold NAD(P)(+)-binding proteins
    Nucleotide Protein
    Heading Accession and Version

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