U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    rag1 recombination activating 1 [ Xiphias gladius (swordfish) ]

    Gene ID: 120793478, updated on 8-May-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    rag1
    Gene description
    recombination activating 1
    See related
    EnsemblRapid:ENSXGLG00000020753
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Xiphias gladius
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Istiophoriformes; Xiphiidae; Xiphias
    Orthologs
    human zebrafish all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See rag1 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    100 current ASM1685928v1 (GCF_016859285.1) 8 NC_053407.1 (13036414..13040585, complement)

    Chromosome 8 - NC_053407.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC120793737 Neighboring gene uncharacterized si:ch211-256a21.4 Neighboring gene recombination activating gene 2 Neighboring gene 1-aminocyclopropane-1-carboxylate synthase homolog (Arabidopsis)(non-functional)

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_053407.1 Chromosome 8 Reference ASM1685928v1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables double-stranded DNA endonuclease activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ubiquitin protein ligase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in V(D)J recombination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in adaptive immune response IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in pre-B cell allelic exclusion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of DNA recombinase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of endodeoxyribonuclease complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    V(D)J recombination-activating protein 1
    Names
    recombinase activating protein 1
    recombination activating protein 1

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Xiphias gladius Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM1685928v1 Primary Assembly

    Genomic

    1. NC_053407.1 Reference ASM1685928v1 Primary Assembly

      Range
      13036414..13040585 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_040133598.1 → XP_039989532.1  V(D)J recombination-activating protein 1

      Related
      ENSXGLP00000059514.1, ENSXGLT00000061873.1
      Conserved Domains (3) summary
      pfam12940
      Location:414 → 1062
      RAG1; Recombination-activation protein 1 (RAG1), recombinase
      cd00162
      Location:313 → 351
      RING_Ubox; RING-HC finger (C3HC4-type) [structural motif]
      cl17238
      Location:310 → 354
      RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.