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    LOC122084234 DNA-directed RNA polymerase II subunit RPB1 [ Macadamia integrifolia ]

    Gene ID: 122084234, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC122084234
    Gene description
    DNA-directed RNA polymerase II subunit RPB1
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macadamia integrifolia
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Proteales; Proteaceae; Macadamia
    Also known as
    RPB1a
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    Genomic context

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    See LOC122084234 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    100 current SCU_Mint_v3 (GCF_013358625.1) 7 NC_056563.1 (26901377..26914305, complement)

    Chromosome 7 - NC_056563.1Genomic Context describing neighboring genes Neighboring gene thioredoxin-like protein CDSP32, chloroplastic Neighboring gene uncharacterized protein At1g76070-like Neighboring gene T-complex protein 1 subunit eta-like Neighboring gene uncharacterized LOC122083453

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_056563.1 Chromosome 7 Reference SCU_Mint_v3 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of RNA polymerase II, core complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    DNA-directed RNA polymerase II subunit RPB1
    Names
    RNA polymerase II largest subunit

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macadamia integrifolia Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference SCU_Mint_v3 Primary Assembly

    Genomic

    1. NC_056563.1 Reference SCU_Mint_v3 Primary Assembly

      Range
      26901377..26914305 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_042652320.1 → XP_042508254.1  DNA-directed RNA polymerase II subunit RPB1 isoform X1

      Conserved Domains (2) summary
      cd02584
      Location:1054 → 1466
      RNAP_II_Rpb1_C; Largest subunit (Rpb1) of Eukaryotic RNA polymerase II (RNAP II), C-terminal domain
      cd02733
      Location:16 → 871
      RNAP_II_RPB1_N; Largest subunit (Rpb1) of eukaryotic RNA polymerase II (RNAP II), N-terminal domain

    2. XM_042652321.1 → XP_042508255.1  DNA-directed RNA polymerase II subunit RPB1 isoform X2

      Conserved Domains (2) summary
      cd02584
      Location:735 → 1147
      RNAP_II_Rpb1_C; Largest subunit (Rpb1) of Eukaryotic RNA polymerase II (RNAP II), C-terminal domain
      cd02733
      Location:4 → 552
      RNAP_II_RPB1_N; Largest subunit (Rpb1) of eukaryotic RNA polymerase II (RNAP II), N-terminal domain
    Nucleotide Protein
    Heading Accession and Version

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