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    rc3h1b ring finger and CCCH-type domains 1b [ Clupea harengus (Atlantic herring) ]

    Gene ID: 122131470, updated on 18-Jun-2024

    Summary

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    Gene symbol
    rc3h1b
    Gene description
    ring finger and CCCH-type domains 1b
    See related
    Ensembl:ENSCHAG00020002409
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Clupea harengus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Clupei; Clupeiformes; Clupeoidei; Clupeidae; Clupea
    Orthologs
    zebrafish all
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    Genomic context

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    See rc3h1b in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    20
    Annotation release Status Assembly Chr Location
    102 current Ch_v2.0.2 (GCF_900700415.2) Unplaced Scaffold NW_024880162.1 (7..15962, complement)

    NW_024880162.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC122131471

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_024880162 Unplaced Scaffold Reference Ch_v2.0.2 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    roquin-1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Clupea harengus Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Ch_v2.0.2 Primary Assembly

    Genomic

    1. NW_024880162.1 Reference Ch_v2.0.2 Primary Assembly

      Range
      7..15962 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_042706202.1 → XP_042562136.1  roquin-1 isoform X2

      UniProtKB/TrEMBL
      A0A8M1KDK2
      Conserved Domains (4) summary
      smart00356
      Location:413 → 439
      ZnF_C3H1; zinc finger
      PRK10263
      Location:556 → 796
      PRK10263; DNA translocase FtsK; Provisional
      cd16781
      Location:11 → 54
      mRING-HC-C3HC3D_Roquin1; Modified RING finger, HC subclass (C3HC3D-type), found in Roquin-1
      pfam12868
      Location:559 → 662
      DUF3824; Domain of unknwon function (DUF3824)

    2. XM_042706201.1 → XP_042562135.1  roquin-1 isoform X1

      UniProtKB/TrEMBL
      A0A8M1KHW5
      Related
      ENSCHAP00020004912.1, ENSCHAT00020005357.1
      Conserved Domains (4) summary
      smart00356
      Location:413 → 439
      ZnF_C3H1; zinc finger
      PRK10263
      Location:556 → 796
      PRK10263; DNA translocase FtsK; Provisional
      cd16781
      Location:11 → 54
      mRING-HC-C3HC3D_Roquin1; Modified RING finger, HC subclass (C3HC3D-type), found in Roquin-1
      pfam12868
      Location:559 → 662
      DUF3824; Domain of unknwon function (DUF3824)
    Nucleotide Protein
    Heading Accession and Version

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