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    LOC122280334 high mobility group B protein 10 [ Carya illinoinensis ]

    Gene ID: 122280334, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC122280334
    Gene description
    high mobility group B protein 10
    Locus tag
    CIPAW_11G210600
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Carya illinoinensis
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Carya
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    Genomic context

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    See LOC122280334 in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    100 current C.illinoinensisPawnee_v1 (GCF_018687715.1) 11 NC_056762.1 (45239893..45244222)

    Chromosome 11 - NC_056762.1Genomic Context describing neighboring genes Neighboring gene photosystem I reaction center subunit V, chloroplastic Neighboring gene transfer RNA tryptophan (anticodon CCA) Neighboring gene uncharacterized LOC122282553 Neighboring gene WPP domain-interacting protein 2-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_056762.1 Chromosome 11 Reference C.illinoinensisPawnee_v1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Transcriptomic Analysis Provides Insights into Grafting Union Development in Pecan (Carya illinoinensis). Mo Z, et al. Genes (Basel), 2018 Feb 5. PMID 29401757, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    high mobility group B protein 10

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Carya illinoinensis Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference C.illinoinensisPawnee_v1 Primary Assembly

    Genomic

    1. NC_056762.1 Reference C.illinoinensisPawnee_v1 Primary Assembly

      Range
      45239893..45244222
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_043091180.1 → XP_042947114.1  high mobility group B protein 10

      UniProtKB/TrEMBL
      A0A8T1PAA4
      Conserved Domains (2) summary
      cd01390
      Location:267 → 330
      HMGB-UBF_HMG-box; class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal ...
      cd16872
      Location:69 → 154
      ARID_HMGB9-like; ARID/BRIGHT DNA binding domain of Arabidopsis thaliana high mobility group B proteins HMGB9, HMGB10, HMGB11, HMGB15 and similar proteins

    2. XM_043091179.1 → XP_042947113.1  high mobility group B protein 10

      UniProtKB/TrEMBL
      A0A8T1PAA4
      Conserved Domains (2) summary
      cd01390
      Location:267 → 330
      HMGB-UBF_HMG-box; class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal ...
      cd16872
      Location:69 → 154
      ARID_HMGB9-like; ARID/BRIGHT DNA binding domain of Arabidopsis thaliana high mobility group B proteins HMGB9, HMGB10, HMGB11, HMGB15 and similar proteins
    Nucleotide Protein
    Heading Accession and Version

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