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    LOC122280716 uncharacterized WD repeat-containing protein C2A9.03-like [ Carya illinoinensis ]

    Gene ID: 122280716, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC122280716
    Gene description
    uncharacterized WD repeat-containing protein C2A9.03-like
    Locus tag
    CIPAW_11G210400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Carya illinoinensis
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Carya
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    Genomic context

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    See LOC122280716 in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    100 current C.illinoinensisPawnee_v1 (GCF_018687715.1) 11 NC_056762.1 (45218821..45229528)

    Chromosome 11 - NC_056762.1Genomic Context describing neighboring genes Neighboring gene phosphatidylinositol/phosphatidylcholine transfer protein SFH13-like Neighboring gene GPI-anchored protein LLG1 Neighboring gene photosystem I reaction center subunit V, chloroplastic Neighboring gene transfer RNA tryptophan (anticodon CCA)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_056762.1 Chromosome 11 Reference C.illinoinensisPawnee_v1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. RNA-Seq Analysis of Developing Pecan (Carya illinoinensis) Embryos Reveals Parallel Expression Patterns among Allergen and Lipid Metabolism Genes. Mattison CP, et al. J Agric Food Chem, 2017 Feb 22. PMID 28121438

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized WD repeat-containing protein C2A9.03-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Carya illinoinensis Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference C.illinoinensisPawnee_v1 Primary Assembly

    Genomic

    1. NC_056762.1 Reference C.illinoinensisPawnee_v1 Primary Assembly

      Range
      45218821..45229528
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_043091715.1 → XP_042947649.1  uncharacterized WD repeat-containing protein C2A9.03-like isoform X1

      UniProtKB/TrEMBL
      A0A8T1PAU0
      Conserved Domains (2) summary
      sd00039
      Location:279 → 315
      7WD40; WD40 repeat [structural motif]
      cl29593
      Location:278 → 426
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

    2. XM_043091713.1 → XP_042947647.1  uncharacterized WD repeat-containing protein C2A9.03-like isoform X1

      UniProtKB/TrEMBL
      A0A8T1PAU0
      Conserved Domains (2) summary
      sd00039
      Location:279 → 315
      7WD40; WD40 repeat [structural motif]
      cl29593
      Location:278 → 426
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

    3. XM_043091716.1 → XP_042947650.1  uncharacterized WD repeat-containing protein C2A9.03-like isoform X1

      UniProtKB/TrEMBL
      A0A8T1PAU0
      Conserved Domains (2) summary
      sd00039
      Location:279 → 315
      7WD40; WD40 repeat [structural motif]
      cl29593
      Location:278 → 426
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

    4. XM_043091717.1 → XP_042947651.1  uncharacterized WD repeat-containing protein C2A9.03-like isoform X1

      UniProtKB/TrEMBL
      A0A8T1PAU0
      Conserved Domains (2) summary
      sd00039
      Location:279 → 315
      7WD40; WD40 repeat [structural motif]
      cl29593
      Location:278 → 426
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

    5. XM_043091718.1 → XP_042947652.1  uncharacterized WD repeat-containing protein C2A9.03-like isoform X2

      Conserved Domains (2) summary
      sd00039
      Location:132 → 168
      7WD40; WD40 repeat [structural motif]
      cl29593
      Location:131 → 279
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

    RNA

    1. XR_006230013.1 RNA Sequence

    2. XR_006230014.1 RNA Sequence

    3. XR_006230012.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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