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    LOC122295221 transcription factor TGA9-like [ Carya illinoinensis ]

    Gene ID: 122295221, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC122295221
    Gene description
    transcription factor TGA9-like
    Locus tag
    CIPAW_14G100400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Carya illinoinensis
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Carya
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    Genomic context

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    See LOC122295221 in Genome Data Viewer
    Location:
    chromosome: 14
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    100 current C.illinoinensisPawnee_v1 (GCF_018687715.1) 14 NC_056765.1 (25588066..25596226)

    Chromosome 14 - NC_056765.1Genomic Context describing neighboring genes Neighboring gene transmembrane 9 superfamily member 5 Neighboring gene F-box/LRR-repeat protein At1g67190-like Neighboring gene uncharacterized LOC122294076 Neighboring gene U4/U6 small nuclear ribonucleoprotein Prp31 homolog

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_056765.1 Chromosome 14 Reference C.illinoinensisPawnee_v1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transcription factor TGA9-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Carya illinoinensis Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference C.illinoinensisPawnee_v1 Primary Assembly

    Genomic

    1. NC_056765.1 Reference C.illinoinensisPawnee_v1 Primary Assembly

      Range
      25588066..25596226
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_043104337.1 → XP_042960271.1  transcription factor TGA9-like isoform X2

      UniProtKB/TrEMBL
      A0A8T1NCY5, A0A922AJE4
      Conserved Domains (1) summary
      cd14708
      Location:195 → 247
      bZIP_HBP1b-like; Basic leucine zipper (bZIP) domain of uncharaterized BZIP transcription factors with similarity to Triticum aestivum HBP-1b: a DNA-binding and dimerization domain

    2. XM_043104336.1 → XP_042960270.1  transcription factor TGA9-like isoform X1

      UniProtKB/TrEMBL
      A0A8T1NL94, A0A922AJ84
      Conserved Domains (1) summary
      cd14708
      Location:195 → 247
      bZIP_HBP1b-like; Basic leucine zipper (bZIP) domain of uncharaterized BZIP transcription factors with similarity to Triticum aestivum HBP-1b: a DNA-binding and dimerization domain

    3. XM_043104338.1 → XP_042960272.1  transcription factor TGA9-like isoform X3

      UniProtKB/TrEMBL
      A0A8T1ND80, A0A922AH85
      Conserved Domains (1) summary
      cd14708
      Location:116 → 168
      bZIP_HBP1b-like; Basic leucine zipper (bZIP) domain of uncharaterized BZIP transcription factors with similarity to Triticum aestivum HBP-1b: a DNA-binding and dimerization domain
    Nucleotide Protein
    Heading Accession and Version

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