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    LOC122299924 tetratricopeptide repeat protein 33 [ Carya illinoinensis ]

    Gene ID: 122299924, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC122299924
    Gene description
    tetratricopeptide repeat protein 33
    Locus tag
    CIPAW_16G022000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Carya illinoinensis
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Carya
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    Genomic context

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    See LOC122299924 in Genome Data Viewer
    Location:
    chromosome: 16
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    100 current C.illinoinensisPawnee_v1 (GCF_018687715.1) 16 NC_056767.1 (3215970..3218438)

    Chromosome 16 - NC_056767.1Genomic Context describing neighboring genes Neighboring gene 60S ribosomal protein L14-1-like Neighboring gene uncharacterized LOC122299645 Neighboring gene 2-methylpropanoate--CoA ligase CCL4-like Neighboring gene chalcone synthase-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_056767.1 Chromosome 16 Reference C.illinoinensisPawnee_v1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Transcriptomic Analysis Provides Insights into Grafting Union Development in Pecan (Carya illinoinensis). Mo Z, et al. Genes (Basel), 2018 Feb 5. PMID 29401757, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    tetratricopeptide repeat protein 33

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Carya illinoinensis Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference C.illinoinensisPawnee_v1 Primary Assembly

    Genomic

    1. NC_056767.1 Reference C.illinoinensisPawnee_v1 Primary Assembly

      Range
      3215970..3218438
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_043110410.1 → XP_042966344.1  tetratricopeptide repeat protein 33

      UniProtKB/TrEMBL
      A0A8T1N5R8, A0A922D4V4
      Conserved Domains (2) summary
      TIGR02917
      Location:56 → 170
      PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
      sd00006
      Location:70 → 98
      TPR; TPR repeat [structural motif]
    Nucleotide Protein
    Heading Accession and Version

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