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    LOC122299935 chloroplast processing peptidase-like [ Carya illinoinensis ]

    Gene ID: 122299935, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC122299935
    Gene description
    chloroplast processing peptidase-like
    Locus tag
    CIPAW_16G024600
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Carya illinoinensis
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Carya
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    Genomic context

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    See LOC122299935 in Genome Data Viewer
    Location:
    chromosome: 16
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    100 current C.illinoinensisPawnee_v1 (GCF_018687715.1) 16 NC_056767.1 (3721367..3725599, complement)

    Chromosome 16 - NC_056767.1Genomic Context describing neighboring genes Neighboring gene auxilin-related protein 2 Neighboring gene amino acid permease 3-like Neighboring gene amino acid permease 5-like Neighboring gene amino acid permease 3-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_056767.1 Chromosome 16 Reference C.illinoinensisPawnee_v1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Transcriptomic Analysis Provides Insights into Grafting Union Development in Pecan (Carya illinoinensis). Mo Z, et al. Genes (Basel), 2018 Feb 5. PMID 29401757, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables serine-type endopeptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in signal peptide processing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in thylakoid membrane organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast thylakoid membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    chloroplast processing peptidase-like; probable signal peptidase I-1; signal peptidase I-like; uncharacterized protein LOC122299935

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Carya illinoinensis Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference C.illinoinensisPawnee_v1 Primary Assembly

    Genomic

    1. NC_056767.1 Reference C.illinoinensisPawnee_v1 Primary Assembly

      Range
      3721367..3725599 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_043110421.1 → XP_042966355.1  probable signal peptidase I-1 isoform X2

      UniProtKB/TrEMBL
      A0A8T1N3I1, A0A8T1N3U1
      Conserved Domains (1) summary
      TIGR02227
      Location:36 → 118
      sigpep_I_bact; signal peptidase I, bacterial type

    2. XM_043110422.1 → XP_042966356.1  uncharacterized protein LOC122299935 isoform X3

      UniProtKB/TrEMBL
      A0A8T1N3U1
      Conserved Domains (1) summary
      cd06530
      Location:53 → 105
      S26_SPase_I; The S26 Type I signal peptidase (SPase; LepB; leader peptidase B; leader peptidase I; EC 3.4.21.89) family members are essential membrane-bound serine proteases that function to cleave the amino-terminal signal peptide extension from proteins that are ...

    3. XM_043110420.1 → XP_042966354.1  signal peptidase I-like isoform X1

      UniProtKB/TrEMBL
      A0A8T1N3U1
      Conserved Domains (1) summary
      pfam10502
      Location:48 → 139
      Peptidase_S26; Signal peptidase, peptidase S26

    4. XM_043110423.1 → XP_042966357.1  chloroplast processing peptidase-like isoform X4

      UniProtKB/TrEMBL
      A0A8T1N567, A0A922D0U0
      Conserved Domains (1) summary
      pfam10502
      Location:48 → 186
      Peptidase_S26; Signal peptidase, peptidase S26
    Nucleotide Protein
    Heading Accession and Version

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