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    LOC122299938 putative disease resistance RPP13-like protein 1 [ Carya illinoinensis ]

    Gene ID: 122299938, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC122299938
    Gene description
    putative disease resistance RPP13-like protein 1
    Locus tag
    CIPAW_16G095100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Carya illinoinensis
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Carya
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    Genomic context

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    See LOC122299938 in Genome Data Viewer
    Location:
    chromosome: 16
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    100 current C.illinoinensisPawnee_v1 (GCF_018687715.1) 16 NC_056767.1 (26011852..26019496, complement)

    Chromosome 16 - NC_056767.1Genomic Context describing neighboring genes Neighboring gene amino-acid permease BAT1 homolog Neighboring gene putative disease resistance protein RGA1 Neighboring gene UPF0481 protein At3g47200-like Neighboring gene uncharacterized LOC122299758

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_056767.1 Chromosome 16 Reference C.illinoinensisPawnee_v1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ADP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in defense response to other organism IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    putative disease resistance RPP13-like protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Carya illinoinensis Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference C.illinoinensisPawnee_v1 Primary Assembly

    Genomic

    1. NC_056767.1 Reference C.illinoinensisPawnee_v1 Primary Assembly

      Range
      26011852..26019496 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_043110424.1 → XP_042966358.1  putative disease resistance RPP13-like protein 1

      UniProtKB/TrEMBL
      A0A8T1N8P6, A0A922A1C8
      Conserved Domains (5) summary
      PLN03210
      Location:1170 → 1366
      PLN03210; Resistant to P. syringae 6; Provisional
      COG4886
      Location:609 → 756
      LRR; Leucine-rich repeat (LRR) protein [Transcription]
      sd00033
      Location:580 → 599
      LRR_RI; leucine-rich repeat [structural motif]
      sd00034
      Location:1111 → 1134
      LRR_AMN1; leucine-rich repeat [structural motif]
      cl36576
      Location:11 → 81
      RX-CC_like; Coiled-coil domain of the potato virux X resistance protein and similar proteins
    Nucleotide Protein
    Heading Accession and Version

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