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    LOC122319407 26S proteasome non-ATPase regulatory subunit 4 homolog [ Carya illinoinensis ]

    Gene ID: 122319407, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC122319407
    Gene description
    26S proteasome non-ATPase regulatory subunit 4 homolog
    Locus tag
    CIPAW_08G129400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Carya illinoinensis
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Carya
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    Genomic context

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    See LOC122319407 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    100 current C.illinoinensisPawnee_v1 (GCF_018687715.1) 8 NC_056759.1 (26732888..26738050)

    Chromosome 8 - NC_056759.1Genomic Context describing neighboring genes Neighboring gene thiosulfate sulfurtransferase 18 Neighboring gene uncharacterized LOC122274559 Neighboring gene alpha-mannosidase-like Neighboring gene protein EARLY-RESPONSIVE TO DEHYDRATION 7, chloroplastic-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_056759.1 Chromosome 8 Reference C.illinoinensisPawnee_v1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables polyubiquitin modification-dependent protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in proteasome-mediated ubiquitin-dependent protein catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of proteasome regulatory particle, base subcomplex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    26S proteasome non-ATPase regulatory subunit 4 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Carya illinoinensis Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference C.illinoinensisPawnee_v1 Primary Assembly

    Genomic

    1. NC_056759.1 Reference C.illinoinensisPawnee_v1 Primary Assembly

      Range
      26732888..26738050
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_043137465.1 → XP_042993399.1  26S proteasome non-ATPase regulatory subunit 4 homolog isoform X1

      UniProtKB/TrEMBL
      A0A8T1PR70, A0A8T1PVV5
      Conserved Domains (1) summary
      cd01452
      Location:1 → 188
      VWA_26S_proteasome_subunit; 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of ...

    2. XM_043137463.1 → XP_042993397.1  26S proteasome non-ATPase regulatory subunit 4 homolog isoform X1

      UniProtKB/TrEMBL
      A0A8T1PR70, A0A8T1PVV5
      Conserved Domains (1) summary
      cd01452
      Location:1 → 188
      VWA_26S_proteasome_subunit; 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of ...

    3. XM_043137464.1 → XP_042993398.1  26S proteasome non-ATPase regulatory subunit 4 homolog isoform X1

      UniProtKB/TrEMBL
      A0A8T1PR70, A0A8T1PVV5
      Conserved Domains (1) summary
      cd01452
      Location:1 → 188
      VWA_26S_proteasome_subunit; 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of ...

    4. XM_043137470.1 → XP_042993404.1  26S proteasome non-ATPase regulatory subunit 4 homolog isoform X3

      UniProtKB/TrEMBL
      A0A8T1PVV5, A0A8T1PZ14
      Conserved Domains (1) summary
      cd01452
      Location:1 → 188
      VWA_26S_proteasome_subunit; 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of ...

    5. XM_043137467.1 → XP_042993401.1  26S proteasome non-ATPase regulatory subunit 4 homolog isoform X3

      UniProtKB/TrEMBL
      A0A8T1PVV5, A0A8T1PZ14
      Conserved Domains (1) summary
      cd01452
      Location:1 → 188
      VWA_26S_proteasome_subunit; 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of ...

    6. XM_043137469.1 → XP_042993403.1  26S proteasome non-ATPase regulatory subunit 4 homolog isoform X3

      UniProtKB/TrEMBL
      A0A8T1PVV5, A0A8T1PZ14
      Conserved Domains (1) summary
      cd01452
      Location:1 → 188
      VWA_26S_proteasome_subunit; 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of ...

    7. XM_043137466.1 → XP_042993400.1  26S proteasome non-ATPase regulatory subunit 4 homolog isoform X2

      UniProtKB/TrEMBL
      A0A8T1PUQ1, A0A8T1PVV5
      Conserved Domains (1) summary
      cd01452
      Location:1 → 188
      VWA_26S_proteasome_subunit; 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of ...
    Nucleotide Protein
    Heading Accession and Version

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