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    trim8b tripartite motif containing 8b [ Chiloscyllium plagiosum (whitespotted bambooshark) ]

    Gene ID: 122561339, updated on 22-Mar-2024

    Summary

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    Gene symbol
    trim8b
    Gene description
    tripartite motif containing 8b
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Chiloscyllium plagiosum
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Chondrichthyes; Elasmobranchii; Galeomorphii; Galeoidea; Orectolobiformes; Hemiscylliidae; Chiloscyllium
    Orthologs
    zebrafish all
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    Genomic context

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    See trim8b in Genome Data Viewer
    Location:
    chromosome: 22
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    100 current ASM401019v2 (GCF_004010195.1) 22 NC_057731.1 (51923864..52027044, complement)

    Chromosome 22 - NC_057731.1Genomic Context describing neighboring genes Neighboring gene sideroflexin 2 Neighboring gene ADP ribosylation factor like GTPase 3b Neighboring gene uncharacterized LOC122561341 Neighboring gene suppressor of fused homolog (Drosophila) Neighboring gene alpha-centractin

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_057731.1 Chromosome 22 Reference ASM401019v2 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    E3 ubiquitin-protein ligase TRIM8b

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Chiloscyllium plagiosum Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM401019v2 Primary Assembly

    Genomic

    1. NC_057731.1 Reference ASM401019v2 Primary Assembly

      Range
      51923864..52027044 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_043713058.1 → XP_043568993.1  E3 ubiquitin-protein ligase TRIM8b

      Conserved Domains (4) summary
      PRK12704
      Location:213 → 320
      PRK12704; phosphodiesterase; Provisional
      cd19763
      Location:175 → 215
      Bbox2_TRIM8_C-V; B-box-type 2 zinc finger found in tripartite motif-containing protein 8 (TRIM8) and similar proteins
      cd19838
      Location:126 → 170
      Bbox1_TRIM8_C-V; B-box-type 1 zinc finger found in tripartite motif-containing protein 8 (TRIM8) and similar proteins
      cl17238
      Location:13 → 55
      RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain

    2. XM_043713059.1 → XP_043568994.1  E3 ubiquitin-protein ligase TRIM8b

      Conserved Domains (4) summary
      PRK12704
      Location:213 → 320
      PRK12704; phosphodiesterase; Provisional
      cd19763
      Location:175 → 215
      Bbox2_TRIM8_C-V; B-box-type 2 zinc finger found in tripartite motif-containing protein 8 (TRIM8) and similar proteins
      cd19838
      Location:126 → 170
      Bbox1_TRIM8_C-V; B-box-type 1 zinc finger found in tripartite motif-containing protein 8 (TRIM8) and similar proteins
      cl17238
      Location:13 → 55
      RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain

    3. XM_043713057.1 → XP_043568992.1  E3 ubiquitin-protein ligase TRIM8b

      Conserved Domains (4) summary
      PRK12704
      Location:213 → 320
      PRK12704; phosphodiesterase; Provisional
      cd19763
      Location:175 → 215
      Bbox2_TRIM8_C-V; B-box-type 2 zinc finger found in tripartite motif-containing protein 8 (TRIM8) and similar proteins
      cd19838
      Location:126 → 170
      Bbox1_TRIM8_C-V; B-box-type 1 zinc finger found in tripartite motif-containing protein 8 (TRIM8) and similar proteins
      cl17238
      Location:13 → 55
      RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain
    Nucleotide Protein
    Heading Accession and Version

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