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    Lims2 LIM zinc finger domain containing 2 [ Alexandromys fortis (reed vole) ]

    Gene ID: 126497183, updated on 16-Sep-2024

    Summary

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    Gene symbol
    Lims2
    Gene description
    LIM zinc finger domain containing 2
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Alexandromys fortis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Arvicolinae; Alexandromys
    Orthologs
    human mouse all
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    Genomic context

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    See Lims2 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2024_09 current M_Fortis_MF-2015_v1.1 (GCF_014885135.2) Unplaced Scaffold NW_026067904.1 (3892275..3928159, complement)

    NW_026067904.1Genomic Context describing neighboring genes Neighboring gene interacts with SUPT6H, CTD assembly factor 1 Neighboring gene myosin VIIB Neighboring gene G protein-coupled receptor 17 Neighboring gene SFT2 domain containing 3 Neighboring gene WD repeat domain 33 Neighboring gene 60S ribosomal protein L35a-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_026067904 Unplaced Scaffold Reference M_Fortis_MF-2015_v1.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in cell-cell adhesion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in cell-cell junction organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of integrin-mediated signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of substrate adhesion-dependent cell spreading IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cell-cell junction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in focal adhesion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    LIM and senescent cell antigen-like-containing domain protein 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_014885135.2-RS_2024_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference M_Fortis_MF-2015_v1.1

    Genomic

    1. NW_026067904.1 Reference M_Fortis_MF-2015_v1.1

      Range
      3892275..3928159 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_050135101.1 → XP_049991058.1  LIM and senescent cell antigen-like-containing domain protein 2 isoform X4

    2. XM_050135100.1 → XP_049991057.1  LIM and senescent cell antigen-like-containing domain protein 2 isoform X3

    3. XM_050135098.1 → XP_049991055.1  LIM and senescent cell antigen-like-containing domain protein 2 isoform X3

    4. XM_050135097.1 → XP_049991054.1  LIM and senescent cell antigen-like-containing domain protein 2 isoform X2

    5. XM_050135096.1 → XP_049991053.1  LIM and senescent cell antigen-like-containing domain protein 2 isoform X1

    Nucleotide Protein
    Heading Accession and Version

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