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    LOC126860866 MED14-independent group 3 enhancer GRCh37_chr10:14690664-14691863 [ Homo sapiens (human) ]

    Gene ID: 126860866, updated on 10-Oct-2023

    Summary

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    Gene symbol
    LOC126860866
    Gene description
    MED14-independent group 3 enhancer GRCh37_chr10:14690664-14691863
    Gene type
    biological region
    Feature type(s)
    regulatory: enhancer
    RefSeq status
    REVIEWED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Summary
    This genomic region was validated as an active enhancer by the STARR-seq (self-transcribing active regulatory region sequencing) massively parallel reporter assay in HCT116 colorectal carcinoma cells, where it was defined as a group 3 enhancer that depends on the BRD2, BRD4, P300/CBP and CDK7 cofactors, but it has limited or no dependence on the MED14 core Mediator complex subunit. A subregion was also validated as an enhancer by ChIP-STARR-seq in naive human embryonic stem cells, where it is marked by the H3K27ac histone modification. [provided by RefSeq, Dec 2022]
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    Genomic context

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    See LOC126860866 in Genome Data Viewer
    Location:
    chromosome: 10
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 10 NC_000010.11 (14648665..14649864)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 10 NC_060934.1 (14662673..14663872)

    Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124902380 Neighboring gene MIR1265-FAM107B intergenic CAGE-defined T cell enhancer Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr10:14561637-14562152 Neighboring gene uncharacterized LOC124902381 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3072 Neighboring gene family with sequence similarity 107 member B Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:14597390-14598109 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3073 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:14600759-14601636 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2160 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3074 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3075 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:14637528-14638028 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:14638029-14638529 Neighboring gene ReSE screen-validated silencer GRCh37_chr10:14640925-14641108 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3076 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3077 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2161 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2162 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3078 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3079 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3080 Neighboring gene uncharacterized LOC105376429 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3081 Neighboring gene RNA, 5S ribosomal pseudogene 302

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Differential cofactor dependencies define distinct types of human enhancers. Neumayr C, et al. Nature, 2022 Jun. PMID 35650434, Free PMC Article
    2. Functional Dissection of the Enhancer Repertoire in Human Embryonic Stem Cells. Barakat TS, et al. Cell Stem Cell, 2018 Aug 2. PMID 30033119, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    General gene information

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    Other Names

    • H3K27ac hESC enhancer GRCh37_chr10:14690691-14691191

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_085365.1 

      Range
      101..1300
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000010.11 Reference GRCh38.p14 Primary Assembly

      Range
      14648665..14649864
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      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060934.1 Alternate T2T-CHM13v2.0

      Range
      14662673..14663872
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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