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    LOC127827839 H3K4me1 hESC enhancer GRCh37_chr14:69143543-69144043 [ Homo sapiens (human) ]

    Gene ID: 127827839, updated on 12-Sep-2024

    Summary

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    Gene symbol
    LOC127827839
    Gene description
    H3K4me1 hESC enhancer GRCh37_chr14:69143543-69144043
    Gene type
    biological region
    Feature type(s)
    regulatory: enhancer
    RefSeq status
    REVIEWED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Summary
    This genomic region was validated as an active enhancer by the ChIP-STARR-seq massively parallel reporter assay in naive human embryonic stem cells. This enhancer is marked by the H3K4me1 histone modification. [provided by RefSeq, Nov 2022]
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    Genomic context

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    See LOC127827839 in Genome Data Viewer
    Location:
    chromosome: 14
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 14 NC_000014.9 (68676826..68677326)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 14 NC_060938.1 (62883701..62884201)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 14 NC_000014.8 (69143543..69144043)

    Chromosome 14 - NC_000014.9Genomic Context describing neighboring genes Neighboring gene RAD51 paralog B Neighboring gene uncharacterized LOC107984016 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr14:69073752-69074398 Neighboring gene Sharpr-MPRA regulatory region 11310 Neighboring gene ReSE screen-validated silencer GRCh37_chr14:69086033-69086224 Neighboring gene uncharacterized LOC100996664 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5868 Neighboring gene uncharacterized LOC124903333 Neighboring gene ReSE screen-validated silencer GRCh37_chr14:69124801-69124929 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8611 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr14:69136154-69136654 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr14:69136655-69137155 Neighboring gene Sharpr-MPRA regulatory region 15027 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr14:69143042-69143542 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr14:69149771-69150316 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr14:69150317-69150861 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8612 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr14:69171588-69172111 Neighboring gene uncharacterized LOC105370547 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr14:69197453-69198006 Neighboring gene RNA, U6 small nuclear 921, pseudogene Neighboring gene ribosomal protein L12 pseudogene 7

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Functional Dissection of the Enhancer Repertoire in Human Embryonic Stem Cells. Barakat TS, et al. Cell Stem Cell, 2018 Aug 2. PMID 30033119, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See Variation Viewer (GRCh37.p13)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_129338.1 

      Range
      101..601
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000014.9 Reference GRCh38.p14 Primary Assembly

      Range
      68676826..68677326
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      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060938.1 Alternate T2T-CHM13v2.0

      Range
      62883701..62884201
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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