U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    Stn1 STN1 subunit of CST complex [ Peromyscus californicus insignis ]

    Gene ID: 128125765, updated on 25-Mar-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    Stn1
    Gene description
    STN1 subunit of CST complex
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Peromyscus californicus insignis (sub-species: insignis)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Neotominae; Peromyscus
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See Stn1 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2023_02 current ASM782708v3 (GCF_007827085.1) Unplaced Scaffold NW_026294562.1 (14611571..14652011)

    NW_026294562.1Genomic Context describing neighboring genes Neighboring gene collagen type XVII alpha 1 chain Neighboring gene STE20 like kinase Neighboring gene SH3 and PX domains 2A Neighboring gene uncharacterized LOC128124501 Neighboring gene neuralized E3 ubiquitin protein ligase 1 Neighboring gene uncharacterized LOC128124500

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NW_026294562 Unplaced Scaffold Reference ASM782708v3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables single-stranded telomeric DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in DNA replication IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in double-strand break repair via homologous recombination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in nucleotide-excision repair IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in telomere capping IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of CST complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of DNA replication factor A complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in chromosome, telomeric region IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in site of double-strand break IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    CST complex subunit STN1

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_007827085.1-RS_2023_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM782708v3

    Genomic

    1. NW_026294562.1 Reference ASM782708v3

      Range
      14611571..14652011
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_052763453.1 → XP_052619413.1  CST complex subunit STN1 isoform X1

    2. XM_052763452.1 → XP_052619412.1  CST complex subunit STN1 isoform X1

    3. XM_052763454.1 → XP_052619414.1  CST complex subunit STN1 isoform X2

    4. XM_052763455.1 → XP_052619415.1  CST complex subunit STN1 isoform X3

    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.