U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    APOE apolipoprotein E [ Bubalus kerabau (carabao) ]

    Gene ID: 129631129, updated on 26-Mar-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    APOE
    Gene description
    apolipoprotein E
    See related
    EnsemblRapid:ENSAUBG00000027364
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Bubalus kerabau
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bubalus
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See APOE in Genome Data Viewer
    Location:
    chromosome: 17
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_02 current PCC_UOA_SB_1v2 (GCF_029407905.1) 17 NC_073640.1 (56055708..56060676)

    Chromosome 17 - NC_073640.1Genomic Context describing neighboring genes Neighboring gene nectin cell adhesion molecule 2 Neighboring gene transfer RNA cysteine (anticodon GCA) Neighboring gene translocase of outer mitochondrial membrane 40 Neighboring gene apolipoprotein C4 Neighboring gene apolipoprotein C2

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_073640.1 Chromosome 17 Reference PCC_UOA_SB_1v2

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables amyloid-beta binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables lipid binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables low-density lipoprotein particle receptor binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables very-low-density lipoprotein particle receptor binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cholesterol catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in lipid transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in lipoprotein catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in negative regulation of neuron apoptotic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of nitric-oxide synthase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of amyloid-beta clearance IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extracellular region IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of intermediate-density lipoprotein particle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    apolipoprotein E

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_029407905.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference PCC_UOA_SB_1v2

    Genomic

    1. NC_073640.1 Reference PCC_UOA_SB_1v2

      Range
      56055708..56060676
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_055551922.1 → XP_055407897.1  apolipoprotein E

    2. XM_055551921.1 → XP_055407896.1  apolipoprotein E

    3. XM_055551924.1 → XP_055407899.1  apolipoprotein E

    4. XM_055551920.1 → XP_055407895.1  apolipoprotein E

      Related
      ENSAUBP00000034391.1, ENSAUBT00000050219.1
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.