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    RHO rhodopsin [ Kogia breviceps (pygmy sperm whale) ]

    Gene ID: 131763493, updated on 7-Aug-2024

    Summary

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    Gene symbol
    RHO
    Gene description
    rhodopsin
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Kogia breviceps
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Physeteridae; Kogia
    Orthologs
    human mouse all
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    Genomic context

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    See RHO in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_07 current mKogBre1 haplotype 1 (GCF_026419965.1) 10 NC_081319.1 (4805511..4810536, complement)

    Chromosome 10 - NC_081319.1Genomic Context describing neighboring genes Neighboring gene plexin D1 Neighboring gene H1.8 linker histone Neighboring gene uncharacterized LOC136794895 Neighboring gene intraflagellar transport 122 Neighboring gene methyl-CpG binding domain 4, DNA glycosylase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_081319.1 Chromosome 10 Reference mKogBre1 haplotype 1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables G protein-coupled photoreceptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in G protein-coupled receptor signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in cellular response to light stimulus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in phototransduction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in visual perception IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in photoreceptor outer segment IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    rhodopsin

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_026419965.1-RS_2024_07

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference mKogBre1 haplotype 1 Primary Assembly

    Genomic

    1. NC_081319.1 Reference mKogBre1 haplotype 1 Primary Assembly

      Range
      4805511..4810536 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_059075723.2 → XP_058931706.1  rhodopsin

    Nucleotide Protein
    Heading Accession and Version

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