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    LEMA_P094150.1 hypothetical protein [ Leptosphaeria maculans JN3 ]

    Gene ID: 13286402, updated on 17-May-2024

    Summary

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    Gene symbol
    LEMA_P094150.1
    Gene description
    hypothetical protein
    Primary source
    FungiDB:LEMA_P094150.1
    Locus tag
    LEMA_P094150.1
    See related
    VEuPathDB:LEMA_P094150.1
    Gene type
    protein coding
    RNA name
    hypothetical protein
    RefSeq status
    PROVISIONAL
    Organism
    Leptosphaeria maculans JN3 (isolate: v23.1.3)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Dothideomycetes; Pleosporomycetidae; Pleosporales; Pleosporineae; Leptosphaeriaceae; Leptosphaeria; Leptosphaeria maculans species complex
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    Genomic context

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    See LEMA_P094150.1 in Genome Data Viewer
    Location:
    chromosome: Unknown
    Exon count:
    2

    NW_003533872.1Genomic Context describing neighboring genes Neighboring gene similar to soluble cell wall protein Neighboring gene similar to glutamate decarboxylase 1 Neighboring gene similar to RINT-1 family protein Neighboring gene hypothetical protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_003533872.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Effector diversification within compartments of the Leptosphaeria maculans genome affected by Repeat-Induced Point mutations. Rouxel T, et al. Nat Commun, 2011 Feb 15. PMID 21326234, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in ribosomal small subunit export from nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of 90S preribosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleolus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of preribosome, small subunit precursor IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Names
    hypothetical protein

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NW_003533872.1 Reference assembly

      Range
      242860..245074 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_003841437.1 → XP_003841485.1  hypothetical protein LEMA_P094150.1 [Leptosphaeria maculans JN3]

      See identical proteins and their annotated locations for XP_003841485.1

      Status: PROVISIONAL

      UniProtKB/Swiss-Prot
      E5A2Z3
      Conserved Domains (1) summary
      cl21719
      Location:110 → 223
      Pumilio; Pumilio-family RNA binding domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    E5A2Z3.1

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