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    LOC136359818 gallinacin-8-like [ Sylvia atricapilla (blackcap) ]

    Gene ID: 136359818, updated on 3-Aug-2024

    Summary

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    Gene symbol
    LOC136359818
    Gene description
    gallinacin-8-like
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Sylvia atricapilla
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Sylvioidea; Sylviidae; Sylviinae; Sylvia
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    Genomic context

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    See LOC136359818 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_07 current bSylAtr1.pri (GCF_009819655.1) 3 NC_089142.1 (3261239..3274026, complement)

    Chromosome 3 - NC_089142.1Genomic Context describing neighboring genes Neighboring gene gallinacin-10-like Neighboring gene gallinacin-9 Neighboring gene gallinacin-2-like Neighboring gene uncharacterized LOC136358690

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_089142.1 Chromosome 3 Reference bSylAtr1.pri Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables CCR6 chemokine receptor binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables chemoattractant activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cell chemotaxis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in defense response to bacterium IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extracellular region IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in extracellular space IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    gallinacin-8-like
    Names
    beta-defensin 8

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_009819655.1-RS_2024_07

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bSylAtr1.pri Primary Assembly

    Genomic

    1. NC_089142.1 Reference bSylAtr1.pri Primary Assembly

      Range
      3261239..3274026 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066316756.1 → XP_066172853.1  gallinacin-8-like

    Nucleotide Protein
    Heading Accession and Version

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