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    COX2 cytochrome c oxidase subunit II [ Agelasticus xanthophthalmus (pale-eyed blackbird) ]

    Gene ID: 13825676, updated on 23-Jun-2023

    Summary

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    Gene symbol
    COX2
    Gene description
    cytochrome c oxidase subunit II
    Locus tag
    D201_mgp10
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Agelasticus xanthophthalmus (specimen-voucher: FMNH 324094)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Passeroidea; Icteridae; Agelasticus
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    Genomic context

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    Sequence:
    Chromosome: MT; NC_018798.1 (7099..7782)

    Chromosome MT - NC_018798.1Genomic Context describing neighboring genes Neighboring gene cytochrome c oxidase subunit I Neighboring gene tRNA-Ser Neighboring gene tRNA-Asp Neighboring gene tRNA-Lys Neighboring gene ATP synthase F0 subunit 8 Neighboring gene ATP synthase F0 subunit 6

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_018798.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Empirical evaluation of partitioning schemes for phylogenetic analyses of mitogenomic data: an avian case study. Powell AF, et al. Mol Phylogenet Evol, 2013 Jan. PMID 23000817

    GeneRIFs: Gene References Into Functions

    General protein information

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    Preferred Names
    cytochrome c oxidase subunit II

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_018798.1 Reference assembly

      Range
      7099..7782
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. YP_006883788.1 cytochrome c oxidase subunit II (mitochondrion) [Agelasticus xanthophthalmus]

      See identical proteins and their annotated locations for YP_006883788.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      K0A2P5
      Conserved Domains (3) summary
      MTH00117
      Location:1 → 226
      COX2; cytochrome c oxidase subunit II; Provisional
      cd13912
      Location:92 → 221
      CcO_II_C; C-terminal domain of Cytochrome c Oxidase subunit II
      pfam02790
      Location:2 → 82
      COX2_TM; Cytochrome C oxidase subunit II, transmembrane domain
    Nucleotide Protein
    Heading Accession and Version