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    sod superoxide dismutase [ Halobacterium salinarum NRC-1 ]

    Gene ID: 1447971, updated on 17-Jun-2024

    Summary

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    Gene symbol
    sod
    Gene description
    superoxide dismutase
    Locus tag
    VNG_RS05200
    Gene type
    protein coding
    Organism
    Halobacterium salinarum NRC-1 (strain: NRC-1; ATCC 700922, culture-collection: ATCC:700922)
    Lineage
    Archaea; Euryarchaeota; Stenosarchaea group; Halobacteria; Halobacteriales; Halobacteriaceae; Halobacterium
    Old locus tag
    VNG1332G; VNG_1332G
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    Genomic context

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    Sequence:
    NC_002607.1 (993598..994200, complement)

    NC_002607.1Genomic Context describing neighboring genes Neighboring gene DUF5827 family protein Neighboring gene hypothetical protein Neighboring gene deoxyribodipyrimidine photo-lyase Neighboring gene hotdog fold thioesterase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_002607.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Characterization of paralogous and orthologous members of the superoxide dismutase gene family from genera of the halophilic archaebacteria. Joshi P, et al. J Bacteriol, 1993 Mar. PMID 8449865, Free PMC Article
    2. Purification of a manganese-containing superoxide dismutase from Halobacterium halobium. Salin ML, et al. Arch Biochem Biophys, 1988 Feb 1. PMID 3341765
    3. Superoxide dismutase from the extremely halophilic archaebacterium Halobacterium cutirubrum. May BP, et al. J Bacteriol, 1987 Apr. PMID 3104309, Free PMC Article
    4. A manual curation strategy to improve genome annotation: application to a set of haloarchael genomes. Pfeiffer F, et al. Life (Basel), 2015 Jun 2. PMID 26042526, Free PMC Article
    5. Evolution in the laboratory: the genome of Halobacterium salinarum strain R1 compared to that of strain NRC-1. Pfeiffer F, et al. Genomics, 2008 Apr. PMID 18313895

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    superoxide dismutase
    WP_010902966.1

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_002607.1 Reference assembly

      Range
      993598..994200 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. WP_010902966.1 MULTISPECIES: superoxide dismutase [Halobacterium]

      See identical proteins and their annotated locations for WP_010902966.1

      UniProtKB/Swiss-Prot
      P09224, Q03299, Q9HQ47
      UniProtKB/TrEMBL
      A0A4D6GTK1, A0A510N6N5, A0A841H8H0, A0A895AIS9, B0R5D5
      Conserved Domains (1) summary
      COG0605
      Location:1 → 197
      SodA; Superoxide dismutase [Inorganic ion transport and metabolism]
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P09224.3

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