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    LRRC37BP1 leucine rich repeat containing 37B pseudogene 1 [ Homo sapiens (human) ]

    Gene ID: 147172, updated on 17-Jun-2024

    Summary

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    Official Symbol
    LRRC37BP1provided by HGNC
    Official Full Name
    leucine rich repeat containing 37B pseudogene 1provided by HGNC
    Primary source
    HGNC:HGNC:25390
    See related
    AllianceGenome:HGNC:25390
    Gene type
    pseudo
    RefSeq status
    INFERRED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    LRRC37B2
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    Genomic context

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    See LRRC37BP1 in Genome Data Viewer
    Location:
    17q11.2
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 17 NC_000017.11 (30631755..30637464)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 17 NC_060941.1 (31576411..31582120)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 17 NC_000017.10 (28958773..28964482)

    Chromosome 17 - NC_000017.11Genomic Context describing neighboring genes Neighboring gene SMURF2P1-LRRC37BP1 readthrough transcribed pseudogene Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 8398 Neighboring gene SMAD specific E3 ubiquitin protein ligase 2 pseudogene 1 Neighboring gene NF1-REPa UWA160-1 recombination region Neighboring gene leucine rich repeat containing 37B pseudogene Neighboring gene SH3 domain containing GRB2 like 1, endophilin A2 pseudogene 2 Neighboring gene Sharpr-MPRA regulatory region 474 Neighboring gene NF1-REPa PRS1 recombination region Neighboring gene uncharacterized LOC105371723 Neighboring gene NF1-REPa PRS2 recombination region Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:28993682-28994231 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:28994232-28994780 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:28994781-28995330 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:29026421-29027394 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr17:29027395-29028368 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 12000 Neighboring gene H3K27ac hESC enhancer GRCh37_chr17:29036042-29036718 Neighboring gene RNA, 7SL, cytoplasmic 316, pseudogene Neighboring gene ATAC-STARR-seq lymphoblastoid active region 12001 Neighboring gene SUZ12 pseudogene 1 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:29058617-29059237 Neighboring gene SUZ12P1 PRS4 recombination region Neighboring gene cytokine receptor like factor 3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genomic context of paralogous recombination hotspots mediating recurrent NF1 region microdeletion. Forbes SH, et al. Genes Chromosomes Cancer, 2004 Sep. PMID 15236313
    2. Signal sequence and keyword trap in silico for selection of full-length human cDNAs encoding secretion or membrane proteins from oligo-capped cDNA libraries. Otsuki T, et al. DNA Res, 2005. PMID 16303743
    3. The sequence of the human genome. Venter JC, et al. Science, 2001 Feb 16. PMID 11181995
    4. Genome-wide CRISPR screen identifies HNRNPL as a prostate cancer dependency regulating RNA splicing. Fei T, et al. Proc Natl Acad Sci U S A, 2017 Jun 27. PMID 28611215, Free PMC Article
    5. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. Kimura K, et al. Genome Res, 2006 Jan. PMID 16344560, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Identifies this locus as a KIAA0563rel pseudogene.
      Title: Genomic context of paralogous recombination hotspots mediating recurrent NF1 region microdeletion.
    Submit: New GeneRIF Correction

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Other Names

    • LRRC37B pseudogene 1
    • leucine rich repeat containing 37, member B2
    • putative LRRC37B-like protein 2

    Clone Names

    • FLJ43993, DKFZp667M2411

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_046674.2 

      Range
      101..5810
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000017.11 Reference GRCh38.p14 Primary Assembly

      Range
      30631755..30637464
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060941.1 Alternate T2T-CHM13v2.0

      Range
      31576411..31582120
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_207323.1: Suppressed sequence

      Description
      NM_207323.1: This RefSeq was permanently suppressed because currently there is support for the transcript but not for the protein.
    Nucleotide Protein
    Heading Accession and Version

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