U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    ComYMVgp3 polyprotein [ Commelina yellow mottle virus ]

    Gene ID: 1489554, updated on 29-Jul-2022

    Summary

    Go to the top of the page Help
    Gene symbol
    ComYMVgp3
    Gene description
    polyprotein
    Locus tag
    ComYMVgp3
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Commelina yellow mottle virus
    Lineage
    Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Caulimoviridae; Badnavirus
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    clone: pCoYMV89 (and pCoYMV89)
    Sequence:
    NC_001343.1 (1506..7166)

    NC_001343.1Genomic Context describing neighboring genes Neighboring gene tRNA-Met Neighboring gene hypothetical protein Neighboring gene hypothetical protein

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_001343.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Properties of Commelina yellow mottle virus's complete DNA sequence, genomic discontinuities and transcript suggest that it is a pararetrovirus. Medberry SL, et al. Nucleic Acids Res, 1990 Sep 25. PMID 1699203, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    old_sequence

    • Loc: 2672-2674

    variation

    • Loc: 1970
    • Loc: 2452
    • Loc: 2977
    • Loc: 4611
    • Loc: 4794
    • Loc: 6302
    • Loc: 6434

    General protein information

    Go to the top of the page Help
    Preferred Names
    polyprotein

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_001343.1 Reference assembly

      Range
      1506..7166
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_039820.1 polyprotein [Commelina yellow mottle virus]

      See identical proteins and their annotated locations for NP_039820.1

      Status: PROVISIONAL

      UniProtKB/Swiss-Prot
      P19199, P19202
      Conserved Domains (6) summary
      smart00343
      Location:880 → 896
      ZnF_C2HC; zinc finger
      cd01647
      Location:1429 → 1612
      RT_LTR; RT_LTR: Reverse transcriptases (RTs) from retrotransposons and retroviruses which have long terminal repeats (LTRs) in their DNA copies but not in their RNA template. RT catalyzes DNA replication from an RNA template, and is responsible for the ...
      pfam00077
      Location:1195 → 1305
      RVP; Retroviral aspartyl protease
      pfam00078
      Location:1457 → 1612
      RVT_1; Reverse transcriptase (RNA-dependent DNA polymerase)
      pfam14197
      Location:1083 → 1150
      Cep57_CLD_2; Centrosome localization domain of PPC89
      cl14782
      Location:1711 → 1838
      RNase_H_like; Ribonuclease H-like superfamily, including RNase H, HI, HII, HIII, and RNase-like domain IV of spliceosomal protein Prp8
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P19199.2

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.