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    F42C5.6 Transmembrane protein [ Caenorhabditis elegans ]

    Gene ID: 177502, updated on 2-Nov-2024

    Summary

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    Official Symbol
    F42C5.6
    Official Full Name
    Transmembrane protein
    Primary source
    WormBase:WBGene00018348
    Locus tag
    CELE_F42C5.6
    See related
    AllianceGenome:WB:WBGene00018348
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to be located in membrane. [provided by Alliance of Genome Resources, Nov 2024]
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    Genomic context

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    See F42C5.6 in Genome Data Viewer
    Location:
    chromosome: IV
    Exon count:
    3
    Sequence:
    Chromosome: IV; NC_003282.8 (7308445..7309074, complement)

    Chromosome IV - NC_003282.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene RING-type domain-containing protein Neighboring gene Protein-tyrosine phosphatase catalytic domain-containing protein;Tyrosine-protein phosphatase domain-containing protein Neighboring gene G-protein coupled receptors family 1 profile domain-containing protein Neighboring gene Ground-like domain-containing protein Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003282.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    Transmembrane protein
    NP_501165.3
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003282.8 Reference assembly

      Range
      7308445..7309074 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_068764.4 → NP_501165.3  Transmembrane protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_501165.3

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q20326
      Conserved Domains (1) summary
      pfam10853
      Location:68 → 104
      DUF2650; Protein of unknown function (DUF2650)
    Nucleotide Protein
    Heading Accession and Version

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