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    PNEG_00092 hypothetical protein [ Pneumocystis murina B123 ]

    Gene ID: 19893790, updated on 17-May-2024

    Summary

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    Gene symbol
    PNEG_00092
    Gene description
    hypothetical protein
    Locus tag
    PNEG_00092
    See related
    FungiDB:PNEG_00092; VEuPathDB:PNEG_00092
    Gene type
    protein coding
    RNA name
    hypothetical protein
    RefSeq status
    PROVISIONAL
    Organism
    Pneumocystis murina B123 (strain: B123, nat-host: mouse)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Pneumocystidomycetes; Pneumocystidaceae; Pneumocystis
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    Genomic context

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    See PNEG_00092 in Genome Data Viewer
    Location:
    chromosome: Unknown
    Exon count:
    7

    NW_017802363.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene 26S protease regulatory subunit 7 Neighboring gene T-complex protein 1 subunit delta

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_017802363.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables U4 snRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables U6 snRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mRNA splicing, via spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of U4/U6 x U5 tri-snRNP complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Names
    hypothetical protein

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NW_017802363.1 Reference assembly

      Range
      189758..191720
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_007873758.1 → XP_007871949.1  hypothetical protein PNEG_00092 [Pneumocystis murina B123]

      See identical proteins and their annotated locations for XP_007871949.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      M7PMF6
      Conserved Domains (4) summary
      smart00500
      Location:47 → 85
      SFM; Splicing Factor Motif, present in Prp18 and Pr04
      COG2319
      Location:175 → 477
      WD40; WD40 repeat [General function prediction only]
      cd00200
      Location:169 → 472
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
      sd00039
      Location:213 → 258
      7WD40; WD40 repeat [structural motif]
    Nucleotide Protein
    Heading Accession and Version

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