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    PHSY_007034 U3 snoRNP-associated protein Rrp5 [ Pseudozyma hubeiensis SY62 ]

    Gene ID: 24112299, updated on 9-Nov-2023

    Summary

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    Gene symbol
    PHSY_007034
    Gene description
    U3 snoRNP-associated protein Rrp5
    Locus tag
    PHSY_007034
    Gene type
    protein coding
    RNA name
    U3 snoRNP-associated protein Rrp5
    RefSeq status
    PROVISIONAL
    Organism
    Pseudozyma hubeiensis SY62 (strain: SY62)
    Lineage
    Eukaryota; Fungi; Dikarya; Basidiomycota; Ustilaginomycotina; Ustilaginomycetes; Ustilaginales; Ustilaginaceae; mitosporic Ustilaginaceae; Pseudozyma
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    Genomic context

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    Exon count:
    1

    NW_012133850.1Genomic Context describing neighboring genes Neighboring gene potential mitochondrial chaperonin Neighboring gene hypothetical protein Neighboring gene major facilitator super Neighboring gene potential anaphase-promoting complex processivity factor

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_012133850.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Draft Genome Sequence of the Basidiomycetous Yeast-Like Fungus Pseudozyma hubeiensis SY62, Which Produces an Abundant Amount of the Biosurfactant Mannosylerythritol Lipids. Konishi M, et al. Genome Announc, 2013 Jun 27. PMID 23814110, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in rRNA processing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleolus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of small-subunit processome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Names
    U3 snoRNP-associated protein Rrp5

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NW_012133850.1 Reference assembly

      Range
      417299..421984 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_012337630.1 → XP_012193020.1  U3 snoRNP-associated protein Rrp5 [Pseudozyma hubeiensis SY62]

      See identical proteins and their annotated locations for XP_012193020.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      R9PDH8
      Conserved Domains (8) summary
      smart00316
      Location:863 → 935
      S1; Ribosomal protein S1-like RNA-binding domain
      cd05697
      Location:596 → 661
      S1_Rrp5_repeat_hs5; S1_Rrp5_repeat_hs5: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in ...
      cd05707
      Location:961 → 1028
      S1_Rrp5_repeat_sc11; S1_Rrp5_repeat_sc11: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in ...
      cd05708
      Location:1062 → 1138
      S1_Rrp5_repeat_sc12; S1_Rrp5_repeat_sc12: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in ...
      TIGR00717
      Location:682 → 1134
      rpsA; ribosomal protein S1
      sd00006
      Location:1374 → 1399
      TPR; TPR repeat [structural motif]
      pfam05843
      Location:1408 → 1528
      Suf; Suppressor of forked protein (Suf)
      cl09927
      Location:501 → 574
      S1_like; S1_like: Ribosomal protein S1-like RNA-binding domain. Found in a wide variety of RNA-associated proteins. Originally identified in S1 ribosomal protein. This superfamily also contains the Cold Shock Domain (CSD), which is a homolog of the S1 domain. ...
    Nucleotide Protein
    Heading Accession and Version

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