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    rhp42 DNA repair protein Rhp42 [ Schizosaccharomyces pombe (fission yeast) ]

    Gene ID: 2539465, updated on 18-Sep-2024

    Summary

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    Official Symbol
    rhp42
    Official Full Name
    DNA repair protein Rhp42
    Primary source
    PomBase:SPCC4G3.10c
    Locus tag
    SPOM_SPCC4G3.10C
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Schizosaccharomyces pombe (strain: 972h-)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
    Also known as
    rhp4b
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    Genomic context

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    See rhp42 in Genome Data Viewer
    Location:
    chromosome: III
    Exon count:
    1
    Sequence:
    Chromosome: III; NC_003421.2 (451795..454813)

    Chromosome III - NC_003421.2Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene protein nur1 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene GTPase-activating protein Gyp3 Neighboring gene serine/threonine protein kinase S6K family Psk1 Neighboring gene ncRNA Neighboring gene PHD finger domain-containing protein Phf1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003421.2

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Two budding yeast RAD4 homologs in fission yeast play different roles in the repair of UV-induced DNA damage. Fukumoto Y, et al. DNA Repair (Amst), 2002 Oct 1. PMID 12531030
    2. Repair of damaged and mismatched DNA by the XPC homologues Rhp41 and Rhp42 of fission yeast. Marti TM, et al. Genetics, 2003 Jun. PMID 12807767, Free PMC Article
    3. Phosphorylation of the RNA-binding protein Zfs1 modulates sexual differentiation in fission yeast. Navarro FJ, et al. J Cell Sci, 2017 Dec 15. PMID 29084823, Free PMC Article
    4. A central role for TOR signalling in a yeast model for juvenile CLN3 disease. Bond ME, et al. Microb Cell, 2015 Nov 11. PMID 28357272, Free PMC Article
    5. ORFeome cloning and global analysis of protein localization in the fission yeast Schizosaccharomyces pombe. Matsuyama A, et al. Nat Biotechnol, 2006 Jul. PMID 16823372

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by PomBase

    Function Evidence Code Pubs
    enables damaged DNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables single-stranded DNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Process Evidence Code Pubs
    involved_in mismatch repair IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in mismatch repair IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    involved_in nucleotide-excision repair IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in nucleotide-excision repair IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of XPC complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    is_active_in cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    is_active_in nucleolus HDA PubMed 
    part_of nucleotide-excision repair factor 2 complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    DNA repair protein Rhp42

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003421.2 Reference assembly

      Range
      451795..454813
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001022821.3 → NP_587828.1  DNA repair protein Rhp42 [Schizosaccharomyces pombe]

      See identical proteins and their annotated locations for NP_587828.1

      Status: PROVISIONAL

      UniProtKB/Swiss-Prot
      P87235
      Conserved Domains (5) summary
      TIGR00605
      Location:3 → 686
      rad4; DNA repair protein rad4
      pfam03835
      Location:288 → 436
      Rad4; Rad4 transglutaminase-like domain
      pfam10403
      Location:445 → 498
      BHD_1; Rad4 beta-hairpin domain 1
      pfam10404
      Location:502 → 564
      BHD_2; Rad4 beta-hairpin domain 2
      pfam10405
      Location:571 → 641
      BHD_3; Rad4 beta-hairpin domain 3
    Nucleotide Protein
    Heading Accession and Version

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