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    rcl1 rRNA processing protein [ Schizosaccharomyces pombe (fission yeast) ]

    Gene ID: 2542936, updated on 18-Sep-2024

    Summary

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    Official Symbol
    rcl1
    Official Full Name
    rRNA processing protein
    Primary source
    PomBase:SPAC12G12.06c
    Locus tag
    SPOM_SPAC12G12.06C
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Schizosaccharomyces pombe (strain: 972h-)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
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    Genomic context

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    See rcl1 in Genome Data Viewer
    Location:
    chromosome: I
    Exon count:
    1
    Sequence:
    Chromosome: I; NC_003424.3 (336322..338157)

    Chromosome I - NC_003424.3Genomic Context describing neighboring genes Neighboring gene non-classical export protein 1 Neighboring gene mitochondrial 54S ribosomal protein uL6m Neighboring gene ncRNA Neighboring gene caprin Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene SAGA complex/transcription factor TFIID complex subunit Taf9 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene protein Mcp60

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003424.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Epe1 recruits BET family bromodomain protein Bdf2 to establish heterochromatin boundaries. Wang J, et al. Genes Dev, 2013 Sep 1. PMID 24013502, Free PMC Article
    2. Proteomic profiling and functional characterization of post-translational modifications of the fission yeast RNA exosome. Telekawa C, et al. Nucleic Acids Res, 2018 Nov 30. PMID 30321377, Free PMC Article
    3. Post-transcriptional regulation of meiotic genes by a nuclear RNA silencing complex. Egan ED, et al. RNA, 2014 Jun. PMID 24713849, Free PMC Article
    4. A Proteome-wide Fission Yeast Interactome Reveals Network Evolution Principles from Yeasts to Human. Vo TV, et al. Cell, 2016 Jan 14. PMID 26771498, Free PMC Article
    5. The genome sequence of Schizosaccharomyces pombe. Wood V, et al. Nature, 2002 Feb 21. PMID 11859360

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by PomBase

    Function Evidence Code Pubs
    enables RNA endonuclease activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Process Evidence Code Pubs
    involved_in endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in nucleolus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    rRNA processing protein

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003424.3 Reference assembly

      Range
      336322..338157
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001018292.3 → NP_592892.1  rRNA processing protein [Schizosaccharomyces pombe]

      See identical proteins and their annotated locations for NP_592892.1

      Status: PROVISIONAL

      UniProtKB/Swiss-Prot
      Q09870
      Conserved Domains (2) summary
      cd00295
      Location:3 → 340
      RNA_Cyclase; RNA 3' phosphate cyclase domain - RNA phosphate cyclases are enzymes that catalyze the ATP-dependent conversion of 3'-phosphate at the end of RNA into 2', 3'-cyclic phosphodiester bond. The enzymes are conserved in eucaryotes, bacteria and archaea. The ...
      TIGR03400
      Location:7 → 363
      18S_RNA_Rcl1p; 18S rRNA biogenesis protein RCL1
    Nucleotide Protein
    Heading Accession and Version

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