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    AHCTF1P1 AT-hook containing transcription factor 1 pseudogene 1 [ Homo sapiens (human) ]

    Gene ID: 285116, updated on 17-Sep-2024

    Summary

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    Official Symbol
    AHCTF1P1provided by HGNC
    Official Full Name
    AT-hook containing transcription factor 1 pseudogene 1provided by HGNC
    Primary source
    HGNC:HGNC:24620
    See related
    AllianceGenome:HGNC:24620
    Gene type
    pseudo
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    AHCTF1P; ELYS-like
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    Genomic context

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    See AHCTF1P1 in Genome Data Viewer
    Location:
    2q24.2
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (161499067..161507902, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (161955628..161964463, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (162355578..162364413, complement)

    Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene proteasome 26S subunit, non-ATPase 14 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16713 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12058 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12059 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:162272934-162273556 Neighboring gene RNA, 5S ribosomal pseudogene 108 Neighboring gene NANOG hESC enhancer GRCh37_chr2:162279216-162279737 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12060 Neighboring gene T-box brain transcription factor 1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16714 Neighboring gene small nucleolar RNA U13 Neighboring gene MTNAP1 pseudogene 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. VIRMA mediates preferential m(6)A mRNA methylation in 3'UTR and near stop codon and associates with alternative polyadenylation. Yue Y, et al. Cell Discov, 2018. PMID 29507755, Free PMC Article
    2. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Other Names

    • AT hook containing transcription factor 1 pseudogene
    • ELYS transcription factor-like protein TMBS62 pseudogene

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_077058.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC009487

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

      Range
      161499067..161507902 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060926.1 Alternate T2T-CHM13v2.0

      Range
      161955628..161964463 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NG_002622.5: Suppressed sequence

      Description
      NG_002622.5: This RefSeq was permanently suppressed because it is now thought that this pseudogene is transcribed.
    Nucleotide Protein
    Heading Accession and Version

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