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    SRAE_1000356200 Angiopoietin-related protein 5 [ Strongyloides ratti ]

    Gene ID: 36377674, updated on 21-Dec-2023

    Summary

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    Gene symbol
    SRAE_1000356200
    Gene description
    Angiopoietin-related protein 5
    Locus tag
    SRAE_1000356200
    Gene type
    protein coding
    RNA name
    Angiopoietin-related protein 5
    RefSeq status
    PROVISIONAL
    Organism
    Strongyloides ratti (strain: ED321 Heterogonic)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Panagrolaimoidea; Strongyloididae; Strongyloides
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    Genomic context

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    See SRAE_1000356200 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    3
    Sequence:
    Chromosome: 1; NC_037307.1 (11652079..11653815)

    Chromosome 1 - NC_037307.1Genomic Context describing neighboring genes Neighboring gene Amino acid/polyamine transporter I family-containing protein Neighboring gene H/ACA ribonucleoprotein complex subunit 1 Neighboring gene MFS-type transporter SLC18B1 Neighboring gene Cyclin-K

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037307.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in collagen-containing extracellular matrix IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in extracellular space IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    Angiopoietin-related protein 5

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_037307.1 Reference assembly

      Range
      11652079..11653815
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_024650766.1 → XP_024504510.1  Angiopoietin-related protein 5 [Strongyloides ratti]

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A090MXE8
      Conserved Domains (3) summary
      smart00192
      Location:132 → 154
      LDLa; Low-density lipoprotein receptor domain class A
      cd00112
      Location:207 → 242
      LDLa; Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about ...
      cl00085
      Location:284 → 513
      FReD; Fibrinogen-related domains (FReDs); C terminal globular domain of fibrinogen. Fibrinogen is involved in blood clotting, being activated by thrombin to assemble into fibrin clots. The N-termini of 2 times 3 chains come together to form a globular ...
    Nucleotide Protein
    Heading Accession and Version

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