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    utp4 U3 small nucleolar RNA-associated protein 4 [ Babesia sp. Xinjiang ]

    Gene ID: 39877938, updated on 17-May-2024

    Summary

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    Gene symbol
    utp4
    Gene description
    U3 small nucleolar RNA-associated protein 4
    Locus tag
    BXIN_0517
    See related
    PiroplasmaDB:BXIN_0517; VEuPathDB:BXIN_0517
    Gene type
    protein coding
    RNA name
    U3 small nucleolar RNA-associated protein 4
    RefSeq status
    PROVISIONAL
    Organism
    Babesia sp. Xinjiang (strain: Xinjiang, nat-host: Ovis aries)
    Lineage
    Eukaryota; Sar; Alveolata; Apicomplexa; Aconoidasida; Piroplasmida; Babesiidae; Babesia
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    Genomic context

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    See utp4 in Genome Data Viewer
    Location:
    chromosome: Unknown
    Exon count:
    3

    NW_021639246.1Genomic Context describing neighboring genes Neighboring gene tRNA-specific 2-thiouridylase MnmA Neighboring gene Autophagy-related protein 8 Neighboring gene Eukaryotic translation initiation factor 6 Neighboring gene Ubiquitin-activating enzyme E1 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_021639246.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genomic resources for a unique, low-virulence Babesia taxon from China. Guan G, et al. Parasit Vectors, 2016 Oct 27. PMID 27784333, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of 90S preribosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of small-subunit processome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of t-UTP complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    U3 small nucleolar RNA-associated protein 4

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NW_021639246.1 Reference assembly

      Range
      116863..119391
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_029014460.1 → XP_028872416.1  U3 small nucleolar RNA-associated protein 4 [Babesia sp. Xinjiang]

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A1X1BPF4
      Conserved Domains (3) summary
      COG2319
      Location:342 → 671
      WD40; WD40 repeat [General function prediction only]
      sd00039
      Location:114 → 161
      7WD40; WD40 repeat [structural motif]
      cl29593
      Location:7 → 318
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    Nucleotide Protein
    Heading Accession and Version

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