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    CDHR1 cadherin related family member 1 [ Gallus gallus (chicken) ]

    Gene ID: 414847, updated on 6-Jun-2024

    Summary

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    Symbol
    CDHR1provided by CGNC
    Full Name
    cadherin related family member 1provided by CGNC
    Primary source
    CGNC:1650
    See related
    Ensembl:ENSGALG00010010919
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Also known as
    prCAD; PCDH21
    Orthologs
    human mouse all
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    Genomic context

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    See CDHR1 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    21
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 6 NC_052537.1 (3739523..3792037, complement)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 6 NC_052578.1 (3611561..3663965, complement)

    Chromosome 6 - NC_052537.1Genomic Context describing neighboring genes Neighboring gene leucine rich repeat, Ig-like and transmembrane domains 1 Neighboring gene retinal G protein coupled receptor Neighboring gene leucine rich repeat, Ig-like and transmembrane domains 2 Neighboring gene uncharacterized LOC124418072 Neighboring gene growth hormone inducible transmembrane protein

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A photoreceptor-specific cadherin is essential for the structural integrity of the outer segment and for photoreceptor survival. Rattner A, et al. Neuron, 2001 Dec 6. PMID 11738025
    2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables cadherin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in adherens junction organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in cell morphogenesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in cell-cell junction assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in homophilic cell adhesion via plasma membrane adhesion molecules IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in multicellular organism development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in adherens junction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of catenin complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    cadherin-related family member 1
    Names
    photoreceptor cadherin
    protocadherin-21

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001001759.2 → NP_001001759.1  cadherin-related family member 1 precursor

      See identical proteins and their annotated locations for NP_001001759.1

      Status: VALIDATED

      Source sequence(s)
      AF426394, JAENSK010000227
      UniProtKB/Swiss-Prot
      Q8UVJ7
      UniProtKB/TrEMBL
      A0A8V0YFI7
      Related
      ENSGALP00010014761.1, ENSGALT00010026137.1
      Conserved Domains (1) summary
      cd11304
      Location:141 → 244
      Cadherin_repeat; Cadherin tandem repeat domain

    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052537.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      3739523..3792037 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046942776.1 → XP_046798732.1  cadherin-related family member 1 isoform X3

      UniProtKB/TrEMBL
      A0A8V0Y759, A0A8V0Y8N6
      Related
      ENSGALP00010014790.1, ENSGALT00010026166.1

    2. XM_046942773.1 → XP_046798729.1  cadherin-related family member 1 isoform X1

      UniProtKB/TrEMBL
      A0A8V0Y2F1, A0A8V0YFI7
      Related
      ENSGALP00010014786.1, ENSGALT00010026162.1

    3. XM_046942777.1 → XP_046798733.1  cadherin-related family member 1 isoform X4

      UniProtKB/TrEMBL
      A0A8V0Y8N6, A0A8V0YFK1
      Related
      ENSGALP00010014777.1, ENSGALT00010026153.1

    4. XM_046942775.1 → XP_046798731.1  cadherin-related family member 1 isoform X2

      UniProtKB/TrEMBL
      A0A8V0Y8P1, A0A8V0YFI7
      Related
      ENSGALP00010014773.1, ENSGALT00010026150.1

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052578.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      3611561..3663965 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046919968.1 → XP_046775924.1  cadherin-related family member 1 isoform X3

      UniProtKB/TrEMBL
      A0A8V0Y8N6

    2. XM_046919966.1 → XP_046775922.1  cadherin-related family member 1 isoform X1

      UniProtKB/TrEMBL
      A0A8V0YFI7

    3. XM_046919965.1 → XP_046775921.1  cadherin-related family member 1 isoform X5

      UniProtKB/TrEMBL
      A0A8V0Y750

    4. XM_046919969.1 → XP_046775925.1  cadherin-related family member 1 isoform X4

      UniProtKB/TrEMBL
      A0A8V0Y8N6

    5. XM_046919967.1 → XP_046775923.1  cadherin-related family member 1 isoform X2

      UniProtKB/TrEMBL
      A0A8V0YFI7
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8UVJ7.1 GenPept UniProtKB/Swiss-Prot:Q8UVJ7

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials