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    AP3S1 adaptor related protein complex 3 subunit sigma 1 [ Bos taurus (cattle) ]

    Gene ID: 536359, updated on 6-Jun-2024

    Summary

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    Gene symbol
    AP3S1
    Gene description
    adaptor related protein complex 3 subunit sigma 1
    See related
    BGD:BT26122
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See AP3S1 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 10 NC_037337.1 (4702857..4778610)

    Chromosome 10 - NC_037337.1Genomic Context describing neighboring genes Neighboring gene cysteine dioxygenase type 1 Neighboring gene autophagy related 12 Neighboring gene laeverin Neighboring gene large ribosomal subunit protein uL15m-like Neighboring gene ADP ribosylation factor like GTPase 14 effector protein like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037337.1 Chromosome 10 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Clone Names

    • MGC134559

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in Golgi to vacuole transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in intracellular protein transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of AP-3 adaptor complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in intracellular membrane-bounded organelle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of membrane coat IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    AP-3 complex subunit sigma-1
    Names
    AP-3 complex sigma-3A subunit
    AP-3 complex subunit sigma-3A
    adapter-related protein complex 3 sigma-1 subunit
    adapter-related protein complex 3 subunit sigma-1
    adaptor-related protein complex 3, sigma 1 subunit
    sigma 3A-adaptin
    sigma-adaptin 3a

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001046416.1 → NP_001039881.1  AP-3 complex subunit sigma-1

      See identical proteins and their annotated locations for NP_001039881.1

      Status: PROVISIONAL

      Source sequence(s)
      BC110218
      UniProtKB/Swiss-Prot
      Q2YDH6
      UniProtKB/TrEMBL
      F1N380
      Conserved Domains (1) summary
      cd14834
      Location:1 → 146
      AP3_sigma; AP-3 complex subunit sigma

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037337.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      4702857..4778610
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_059890525.1 → XP_059746508.1  AP-3 complex subunit sigma-1 isoform X5

      UniProtKB/TrEMBL
      F1N380

    2. XM_024997683.2 → XP_024853451.1  AP-3 complex subunit sigma-1 isoform X4

      UniProtKB/TrEMBL
      F1N380
      Conserved Domains (1) summary
      cd14834
      Location:1 → 115
      AP3_sigma; AP-3 complex subunit sigma

    3. XM_059890524.1 → XP_059746507.1  AP-3 complex subunit sigma-1 isoform X2

      UniProtKB/TrEMBL
      F1N380

    4. XM_024997681.2 → XP_024853449.1  AP-3 complex subunit sigma-1 isoform X3

      Conserved Domains (1) summary
      cd14834
      Location:1 → 146
      AP3_sigma; AP-3 complex subunit sigma

    5. XM_024997680.1 → XP_024853448.1  AP-3 complex subunit sigma-1 isoform X1

      UniProtKB/TrEMBL
      F1N380
      Conserved Domains (1) summary
      COG5030
      Location:3 → 131
      APS2; Clathrin adaptor complex, small subunit [Intracellular trafficking and secretion]

    RNA

    1. XR_009496056.1 RNA Sequence

    2. XR_009496055.1 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q2YDH6.1 GenPept UniProtKB/Swiss-Prot:Q2YDH6

    Gene LinkOut

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