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    LOC542002 potassium channel protein ZMK2 [ Zea mays ]

    Gene ID: 542002, updated on 14-Dec-2023

    Summary

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    Gene symbol
    LOC542002
    Gene description
    potassium channel protein ZMK2
    Locus tag
    ZEAMMB73_Zm00001d010209
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Zea mays
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
    Also known as
    K2; ZMK2
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    Genomic context

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    See LOC542002 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    103 current Zm-B73-REFERENCE-NAM-5.0 (GCF_902167145.1) 8 NC_050103.1 (104049347..104084839)
    102.20200423 previous assembly B73 RefGen_v4 (GCF_000005005.2) 8 NC_024466.2 (104125974..104161455)

    Chromosome 8 - NC_050103.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC100276938 Neighboring gene pentatricopeptide repeat-containing protein At2g01390-like Neighboring gene uncharacterized LOC111589985 Neighboring gene uncharacterized LOC103635626 Neighboring gene universal stress protein family protein Neighboring gene beta-galactosidase 7

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Auxin-induced K+ channel expression represents an essential step in coleoptile growth and gravitropism. Philippar K, et al. Proc Natl Acad Sci U S A, 1999 Oct 12. PMID 10518597, Free PMC Article
    2. Molecular basis of plant-specific acid activation of K+ uptake channels. Hoth S, et al. Proc Natl Acad Sci U S A, 1997 Apr 29. PMID 9114073, Free PMC Article
    3. Anchoring 9,371 maize expressed sequence tagged unigenes to the bacterial artificial chromosome contig map by two-dimensional overgo hybridization. Gardiner J, et al. Plant Physiol, 2004 Apr. PMID 15020742, Free PMC Article
    4. Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs. Soderlund C, et al. PLoS Genet, 2009 Nov. PMID 19936069, Free PMC Article
    5. Insights into corn genes derived from large-scale cDNA sequencing. Alexandrov NN, et al. Plant Mol Biol, 2009 Jan. PMID 18937034, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables voltage-gated potassium channel activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in potassium ion transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    potassium channel protein ZMK2
    Names
    potassium channel2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001111650.2 → NP_001105120.2  potassium channel protein ZMK2

      Status: VALIDATED

      Source sequence(s)
      CABHLF010000006
      UniProtKB/TrEMBL
      Q9SM12
      Conserved Domains (2) summary
      PLN03192
      Location:28 → 837
      PLN03192; Voltage-dependent potassium channel; Provisional
      sd00045
      Location:561 → 591
      ANK; ANK repeat [structural motif]

    RefSeqs of Annotated Genomes: Zea mays Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

    Genomic

    1. NC_050103.1 Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

      Range
      104049347..104084839
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_020542325.3 → XP_020397914.1  potassium channel protein ZMK2 isoform X1

      UniProtKB/TrEMBL
      Q9SM12
      Conserved Domains (2) summary
      PLN03192
      Location:28 → 837
      PLN03192; Voltage-dependent potassium channel; Provisional
      sd00045
      Location:561 → 591
      ANK; ANK repeat [structural motif]

    2. XM_008657199.4 → XP_008655421.1  potassium channel protein ZMK2 isoform X2

      UniProtKB/TrEMBL
      A0A1D6FPS6, A0A3L6DRB6
      Conserved Domains (2) summary
      sd00045
      Location:413 → 443
      ANK; ANK repeat [structural motif]
      cl26073
      Location:1 → 689
      Ank_2; Ankyrin repeats (3 copies)
    Nucleotide Protein
    Heading Accession and Version

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