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    LOC542258 phenylalanine ammonia lyase 3 [ Zea mays ]

    Gene ID: 542258, updated on 14-Dec-2023

    Summary

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    Gene symbol
    LOC542258
    Gene description
    phenylalanine ammonia lyase 3
    Locus tag
    ZEAMMB73_Zm00001d017274
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Zea mays
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
    Also known as
    PAL1; pal3; GRMZM2G074604
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    Genomic context

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    See LOC542258 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    103 current Zm-B73-REFERENCE-NAM-5.0 (GCF_902167145.1) 5 NC_050100.1 (190440495..190443938, complement)
    102.20200423 previous assembly B73 RefGen_v4 (GCF_000005005.2) 5 NC_024463.2 (191418710..191422153, complement)

    Chromosome 5 - NC_050100.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC109939341 Neighboring gene uncharacterized LOC109939583 Neighboring gene phenylalanine ammonia lyase9 Neighboring gene phenylalanine ammonia-lyase

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. High levels of linkage disequilibrium and associations with forage quality at a phenylalanine ammonia-lyase locus in European maize (Zea mays L.) inbreds. Andersen JR, et al. Theor Appl Genet, 2007 Jan. PMID 17123062
    2. Maize phenylalanine ammonia-lyase has tyrosine ammonia-lyase activity. Rösler J, et al. Plant Physiol, 1997 Jan. PMID 9008393, Free PMC Article
    3. Partial sequence analysis of 130 randomly selected maize cDNA clones. Keith CS, et al. Plant Physiol, 1993 Jan. PMID 8278499, Free PMC Article
    4. Deep sampling of the Palomero maize transcriptome by a high throughput strategy of pyrosequencing. Vega-Arreguín JC, et al. BMC Genomics, 2009 Jul 6. PMID 19580677, Free PMC Article
    5. Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs. Soderlund C, et al. PLoS Genet, 2009 Nov. PMID 19936069, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Low nucleotide diversity and excessive linkage disequilibrium is identified at the phenylalanine ammonia-lyase locus, where the first step in lignin biosynthesis is catalyzed.
      Title: High levels of linkage disequilibrium and associations with forage quality at a phenylalanine ammonia-lyase locus in European maize (Zea mays L.) inbreds.
    Submit: New GeneRIF Correction

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ammonia-lyase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in L-phenylalanine catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    phenylalanine/tyrosine ammonia-lyase
    Names
    Bifunctional PAL
    Bifunctional phenylalanine ammonia-lyase
    Pal-
    SOG0072
    bnl17.23(pal1)
    bnl17.23(pal3)
    bnl17.23a
    bnl17.23c
    bnl17.23c(pal)
    csu156
    csu358
    csu358b(pal)
    pal
    phenylalanine ammonia lyase 1
    phenylalanine ammonia lyase homolog
    phenylalanine ammonia lyase-like protein
    phenylalanine ammonia-lyase
    sc403
    sc405
    NP_001105334.2
    XP_020393172.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001111864.2 → NP_001105334.2  phenylalanine/tyrosine ammonia-lyase

      See identical proteins and their annotated locations for NP_001105334.2

      Status: PROVISIONAL

      Source sequence(s)
      BT054938
      UniProtKB/TrEMBL
      A0A3L6EVE4, B6U4D6, B8A046
      Conserved Domains (1) summary
      PLN02457
      Location:1 → 701
      PLN02457; phenylalanine ammonia-lyase

    RefSeqs of Annotated Genomes: Zea mays Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

    Genomic

    1. NC_050100.1 Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

      Range
      190440495..190443938 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_020537583.3 → XP_020393172.1  phenylalanine/tyrosine ammonia-lyase isoform X1

      UniProtKB/TrEMBL
      A0A1D6HDL0, A0A1D6HDL1
      Conserved Domains (1) summary
      PLN02457
      Location:4 → 583
      PLN02457; phenylalanine ammonia-lyase
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8VXG7.1 GenPept UniProtKB/Swiss-Prot:Q8VXG7

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials