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    LOC542319 acetyl-coenzyme A carboxylase [ Zea mays ]

    Gene ID: 542319, updated on 14-Dec-2023

    Summary

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    Gene symbol
    LOC542319
    Gene description
    acetyl-coenzyme A carboxylase
    Locus tag
    ZEAMMB73_Zm00001d004125
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Zea mays
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
    Also known as
    ACC1; Acc-1; GRMZM5G858094
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    Genomic context

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    See LOC542319 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    35
    Annotation release Status Assembly Chr Location
    103 current Zm-B73-REFERENCE-NAM-5.0 (GCF_902167145.1) 2 NC_050097.1 (84818640..84832994)
    102.20200423 previous assembly B73 RefGen_v4 (GCF_000005005.2) 2 NC_024460.2 (84495887..84510241)

    Chromosome 2 - NC_050097.1Genomic Context describing neighboring genes Neighboring gene lactoylglutathione lyase Neighboring gene uncharacterized LOC103646643 Neighboring gene uncharacterized LOC103646644 Neighboring gene transcription factor RAX2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A maize acetyl-coenzyme A carboxylase cDNA sequence. Egli MA, et al. Plant Physiol, 1995 Jul. PMID 7630949, Free PMC Article
    2. Molecular cloning of two different cDNAs for maize acetyl CoA carboxylase. Ashton AR, et al. Plant Mol Biol, 1994 Jan. PMID 7906562
    3. An isoleucine/leucine residue in the carboxyltransferase domain of acetyl-CoA carboxylase is critical for interaction with aryloxyphenoxypropionate and cyclohexanedione inhibitors. Zagnitko O, et al. Proc Natl Acad Sci U S A, 2001 Jun 5. PMID 11381131, Free PMC Article
    4. Characterization of the maize endosperm transcriptome and its comparison to the rice genome. Lai J, et al. Genome Res, 2004 Oct. PMID 15466291, Free PMC Article
    5. Deep sampling of the Palomero maize transcriptome by a high throughput strategy of pyrosequencing. Vega-Arreguín JC, et al. BMC Genomics, 2009 Jul 6. PMID 19580677, Free PMC Article

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables acetyl-CoA carboxylase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in fatty acid biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    acetyl-coenzyme A carboxylase
    Names
    acetyl-CoA carboxylase
    acetyl-CoA carboxylase2
    acetyl-coenzyme A carboxylase1
    NP_001105373.1
    XP_008668640.1
    XP_008668641.1
    XP_008668642.1
    XP_020403603.1
    XP_020403604.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001111903.1 → NP_001105373.1  acetyl-coenzyme A carboxylase

      See identical proteins and their annotated locations for NP_001105373.1

      Status: PROVISIONAL

      Source sequence(s)
      U19183
      UniProtKB/TrEMBL
      A0A3L6FR96, A0A3L6FRD0, A0A3L6FRT5, Q41743
      Conserved Domains (8) summary
      cd06850
      Location:774 → 838
      biotinyl_domain; The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, ...
      COG0439
      Location:135 → 640
      AccC; Biotin carboxylase [Lipid transport and metabolism]
      COG0511
      Location:696 → 838
      AccB; Biotin carboxyl carrier protein [Coenzyme transport and metabolism, Lipid transport and metabolism]
      pfam00289
      Location:132 → 251
      CPSase_L_chain; Carbamoyl-phosphate synthase L chain, N-terminal domain
      pfam01039
      Location:1657 → 2210
      Carboxyl_trans; Carboxyl transferase domain
      pfam02785
      Location:527 → 634
      Biotin_carb_C; Biotin carboxylase C-terminal domain
      pfam08326
      Location:839 → 1553
      ACC_central; Acetyl-CoA carboxylase, central region
      cl17255
      Location:256 → 480
      ATP-grasp_4; ATP-grasp domain

    RefSeqs of Annotated Genomes: Zea mays Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

    Genomic

    1. NC_050097.1 Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

      Range
      84818640..84832994
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_020548014.1 → XP_020403603.1  acetyl-coenzyme A carboxylase isoform X2

      UniProtKB/TrEMBL
      A0A1D6EDQ6, Q7XYR4
      Conserved Domains (5) summary
      cd06850
      Location:774 → 838
      biotinyl_domain; The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, ...
      COG0439
      Location:135 → 640
      AccC; Biotin carboxylase [Lipid transport and metabolism]
      pfam01039
      Location:1656 → 2209
      Carboxyl_trans; Carboxyl transferase domain
      pfam08326
      Location:839 → 1543
      ACC_central; Acetyl-CoA carboxylase, central region
      cl27427
      Location:696 → 838
      AccB; Biotin carboxyl carrier protein [Coenzyme transport and metabolism, Lipid transport and metabolism]

    2. XM_008670420.2 → XP_008668642.1  acetyl-coenzyme A carboxylase isoform X2

      See identical proteins and their annotated locations for XP_008668642.1

      UniProtKB/TrEMBL
      A0A1D6EDQ6, Q7XYR4
      Conserved Domains (5) summary
      cd06850
      Location:774 → 838
      biotinyl_domain; The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, ...
      COG0439
      Location:135 → 640
      AccC; Biotin carboxylase [Lipid transport and metabolism]
      pfam01039
      Location:1656 → 2209
      Carboxyl_trans; Carboxyl transferase domain
      pfam08326
      Location:839 → 1543
      ACC_central; Acetyl-CoA carboxylase, central region
      cl27427
      Location:696 → 838
      AccB; Biotin carboxyl carrier protein [Coenzyme transport and metabolism, Lipid transport and metabolism]

    3. XM_008670418.3 → XP_008668640.1  acetyl-coenzyme A carboxylase isoform X1

      See identical proteins and their annotated locations for XP_008668640.1

      UniProtKB/TrEMBL
      A0A1D6EDR6, Q7XYR3, Q7XYR4
      Conserved Domains (5) summary
      cd06850
      Location:774 → 838
      biotinyl_domain; The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, ...
      COG0439
      Location:135 → 640
      AccC; Biotin carboxylase [Lipid transport and metabolism]
      pfam01039
      Location:1657 → 2210
      Carboxyl_trans; Carboxyl transferase domain
      pfam08326
      Location:839 → 1544
      ACC_central; Acetyl-CoA carboxylase, central region
      cl27427
      Location:696 → 838
      AccB; Biotin carboxyl carrier protein [Coenzyme transport and metabolism, Lipid transport and metabolism]

    4. XM_008670419.4 → XP_008668641.1  acetyl-coenzyme A carboxylase isoform X1

      See identical proteins and their annotated locations for XP_008668641.1

      UniProtKB/TrEMBL
      A0A1D6EDR6, Q7XYR3, Q7XYR4
      Conserved Domains (5) summary
      cd06850
      Location:774 → 838
      biotinyl_domain; The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, ...
      COG0439
      Location:135 → 640
      AccC; Biotin carboxylase [Lipid transport and metabolism]
      pfam01039
      Location:1657 → 2210
      Carboxyl_trans; Carboxyl transferase domain
      pfam08326
      Location:839 → 1544
      ACC_central; Acetyl-CoA carboxylase, central region
      cl27427
      Location:696 → 838
      AccB; Biotin carboxyl carrier protein [Coenzyme transport and metabolism, Lipid transport and metabolism]

    5. XM_020548015.2 → XP_020403604.1  acetyl-coenzyme A carboxylase isoform X2

      UniProtKB/TrEMBL
      A0A1D6EDQ6, Q7XYR4
      Conserved Domains (5) summary
      cd06850
      Location:774 → 838
      biotinyl_domain; The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, ...
      COG0439
      Location:135 → 640
      AccC; Biotin carboxylase [Lipid transport and metabolism]
      pfam01039
      Location:1656 → 2209
      Carboxyl_trans; Carboxyl transferase domain
      pfam08326
      Location:839 → 1543
      ACC_central; Acetyl-CoA carboxylase, central region
      cl27427
      Location:696 → 838
      AccB; Biotin carboxyl carrier protein [Coenzyme transport and metabolism, Lipid transport and metabolism]
    Nucleotide Protein
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