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    LOC542363 alcohol dehydrogenase 1 [ Zea mays ]

    Gene ID: 542363, updated on 11-Apr-2024

    Summary

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    Gene symbol
    LOC542363
    Gene description
    alcohol dehydrogenase 1
    Locus tag
    ZEAMMB73_Zm00001d033931
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Zea mays
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
    Also known as
    adh1; adh1A; Adh1-1F; Adh1-1S; GRMZM2G442658
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    Genomic context

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    See LOC542363 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    103 current Zm-B73-REFERENCE-NAM-5.0 (GCF_902167145.1) 1 NC_050096.1 (280590395..280594156, complement)
    102.20200423 previous assembly B73 RefGen_v4 (GCF_000005005.2) 1 NC_024459.2 (278821306..278824958, complement)

    Chromosome 1 - NC_050096.1Genomic Context describing neighboring genes Neighboring gene myo-inositol kinase Neighboring gene vacuolar protein sorting-associated protein 51 homolog Neighboring gene Transducin/WD40 repeat-like superfamily protein Neighboring gene uncharacterized LOC541769

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Two Alleles of Maize ALCOHOL DEHYDROGENASE 1 Have 3' Structural and Poly(a) Addition Polymorphisms. Sachs MM, et al. Genetics, 1986 Jun. PMID 17246333, Free PMC Article
    2. cDNA cloning and induction of the alcohol dehydrogenase gene (Adh1) of maize. Gerlach WL, et al. Proc Natl Acad Sci U S A, 1982 May. PMID 16593188, Free PMC Article
    3. Transgenic DNA introgressed into traditional maize landraces in Oaxaca, Mexico. Quist D, et al. Nature, 2001 Nov 29. PMID 11734853
    4. The paleontology of intergene retrotransposons of maize. SanMiguel P, et al. Nat Genet, 1998 Sep. PMID 9731528
    5. Investigation of the bottleneck leading to the domestication of maize. Eyre-Walker A, et al. Proc Natl Acad Sci U S A, 1998 Apr 14. PMID 9539756, Free PMC Article

    See all (24) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables S-(hydroxymethyl)glutathione dehydrogenase (NAD(P)+) activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables alcohol dehydrogenase (NAD+) activity, zinc-dependent IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in formaldehyde catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    alcohol dehydrogenase 1
    NP_001105409.2
    XP_008648693.1
    XP_023156252.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001111939.2 → NP_001105409.2  alcohol dehydrogenase 1

      Status: VALIDATED

      Source sequence(s)
      AY104302
      UniProtKB/Swiss-Prot
      P00333
      UniProtKB/TrEMBL
      Q43264
      Conserved Domains (1) summary
      cd08301
      Location:8 → 376
      alcohol_DH_plants; Plant alcohol dehydrogenase

    RefSeqs of Annotated Genomes: Zea mays Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

    Genomic

    1. NC_050096.1 Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

      Range
      280590395..280594156 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_008650471.3 → XP_008648693.1  alcohol dehydrogenase 1 isoform X1

      See identical proteins and their annotated locations for XP_008648693.1

      UniProtKB/Swiss-Prot
      P00333
      UniProtKB/TrEMBL
      Q43264
      Conserved Domains (1) summary
      cd08301
      Location:8 → 376
      alcohol_DH_plants; Plant alcohol dehydrogenase

    2. XM_023300484.2 → XP_023156252.1  alcohol dehydrogenase 1 isoform X1

      UniProtKB/Swiss-Prot
      P00333
      UniProtKB/TrEMBL
      Q43264
      Conserved Domains (1) summary
      cd08301
      Location:8 → 376
      alcohol_DH_plants; Plant alcohol dehydrogenase
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P00333.1 GenPept UniProtKB/Swiss-Prot:P00333

    Gene LinkOut

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