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    Zfp973 zinc finger protein 973 [ Mus musculus (house mouse) ]

    Gene ID: 545490, updated on 28-Oct-2024

    Summary

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    Official Symbol
    Zfp973provided by MGI
    Official Full Name
    zinc finger protein 973provided by MGI
    Primary source
    MGI:MGI:3615331
    See related
    Ensembl:ENSMUSG00000078879 AllianceGenome:MGI:3615331
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Gm14306; Gm14436; 6230416C02Rik
    Expression
    Ubiquitous expression in bladder adult (RPKM 5.7), cerebellum adult (RPKM 4.8) and 25 other tissues See more
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    Genomic context

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    See Zfp973 in Genome Data Viewer
    Location:
    2 H4; 2 99.16 cM
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (176362315..176372883)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (176670522..176681090)

    Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer mm9_chr2:176131206-176131506 Neighboring gene zinc finger protein 967 Neighboring gene predicted gene 14308 Neighboring gene STARR-positive B cell enhancer mm9_chr2:176454990-176455291 Neighboring gene predicted gene 14305 Neighboring gene zinc finger protein 937 pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    2. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    3. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
    4. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article
    5. Functional annotation of a full-length mouse cDNA collection. Kawai J, et al. Nature, 2001 Feb 8. PMID 11217851

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Gene Ontology Provided by MGI

    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    KRAB box and zinc finger, C2H2 type domain containing protein-like
    Names
    novel KRAB box and zinc finger, C2H2 type domain containing protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001242943.2 → NP_001229872.1  KRAB box and zinc finger, C2H2 type domain containing protein-like

      See identical proteins and their annotated locations for NP_001229872.1

      Status: VALIDATED

      Source sequence(s)
      CR354442
      Consensus CDS
      CCDS84596.1
      UniProtKB/TrEMBL
      A2BE20
      Related
      ENSMUSP00000104613.3, ENSMUST00000108985.9
      Conserved Domains (5) summary
      smart00349
      Location:23 → 64
      KRAB; krueppel associated box
      COG5048
      Location:43 → 302
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:180 → 200
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam01352
      Location:23 → 62
      KRAB; KRAB box
      pfam13465
      Location:192 → 217
      zf-H2C2_2; Zinc-finger double domain

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000068.8 Reference GRCm39 C57BL/6J

      Range
      176362315..176372883
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

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