pcgf1 polycomb group ring finger 1 [Xenopus tropicalis (tropical clawed frog)] - Gene

Summary

Official Symbol: pcgf1provided by Xenbase
Official Full Name: polycomb group ring finger 1provided by Xenbase
Primary source: Xenbase:XB-GENE-6454077
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Xenopus tropicalis
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as: nspc1; rnf68; rnf3a-2
Annotation information: Annotation category: partial on reference assembly
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 8

Exon count:: 6

Annotation release	Status	Assembly	Chr	Location
104	current	UCB_Xtro_10.0 (GCF_000004195.4)	8	NC_030684.2 (147235831..147239558, complement)

Chromosome 8 - NC_030684.2 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_030684.2 Chromosome 8 Reference UCB_Xtro_10.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Submit: New GeneRIF Correction

General gene information

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Gene Ontology Provided by Xenbase

Function	Evidence Code	Pubs
enables metal ion binding	IEA Inferred from Electronic Annotation more info
enables promoter-specific chromatin binding	IBA Inferred from Biological aspect of Ancestor more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within chromatin remodeling	ISS Inferred from Sequence or Structural Similarity more info
involved_in negative regulation of transcription by RNA polymerase II	IBA Inferred from Biological aspect of Ancestor more info

Component	Evidence Code	Pubs
part_of PRC1 complex	IBA Inferred from Biological aspect of Ancestor more info
part_of PcG protein complex	ISS Inferred from Sequence or Structural Similarity more info
located_in nucleus	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: polycomb group RING finger protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001016417.2 → NP_001016417.2 polycomb group RING finger protein 1

See identical proteins and their annotated locations for NP_001016417.2

Status: PROVISIONAL

Source sequence(s)

CR761098

UniProtKB/Swiss-Prot

Q28H21

UniProtKB/TrEMBL

B7ZT27

Conserved Domains (2) summary

pfam00097
Location:45 → 83

zf-C3HC4; Zinc finger, C3HC4 type (RING finger)

pfam16207
Location:177 → 253

RAWUL; RAWUL domain RING finger- and WD40-associated ubiquitin-like