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    HfgLR_RS19870 restriction endonuclease subunit S [ Haloferax gibbonsii ]

    Gene ID: 59461642, updated on 8-May-2024

    Summary

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    Gene symbol
    HfgLR_RS19870
    Gene description
    restriction endonuclease subunit S
    Locus tag
    HfgLR_RS19870
    Gene type
    protein coding
    Organism
    Haloferax gibbonsii (strain: LR2-5)
    Lineage
    Archaea; Euryarchaeota; Stenosarchaea group; Halobacteria; Halobacteriales; Haloferacaceae; Haloferax
    Old locus tag
    HfgLR_25235
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    Genomic context

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    Location:
    plasmid: pHGLR3

    NZ_CP063208.1Genomic Context describing neighboring genes Neighboring gene M48 family metallopeptidase Neighboring gene type I restriction endonuclease subunit R Neighboring gene class I SAM-dependent DNA methyltransferase Neighboring gene hypothetical protein Neighboring gene hypothetical protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NZ_CP063208.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The DNA recognition subunit of the type IB restriction-modification enzyme EcoAI tolerates circular permutions of its polypeptide chain. Janscak P, et al. J Mol Biol, 1998 Dec 11. PMID 9837717
    2. Biology of DNA restriction. Bickle TA, et al. Microbiol Rev, 1993 Jun. PMID 8336674, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General protein information

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    Preferred Names
    restriction endonuclease subunit S
    WP_193494209.1

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NZ_CP063208.1 Reference assembly

      Range
      46134..47447 complement
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. WP_193494209.1 restriction endonuclease subunit S [Haloferax gibbonsii]

      UniProtKB/TrEMBL
      A0A871BN62
      Conserved Domains (2) summary
      cd17246
      Location:30 → 219
      RMtype1_S_SonII-TRD2-CR2_like; Type I restriction-modification system specificity (S) subunit Target Recognition Domain-ConseRved domain (TRD-CR), similar to Shewanella oneidensis MR-1 S subunit (S.SonII) TRD2-CR2
      cd17273
      Location:243 → 428
      RMtype1_S_EcoJA69PI-TRD1-CR1_like; Type I restriction-modification system specificity (S) subunit Target Recognition Domain-ConseRved domain (TRD-CR), similar to S.EcoJA69PI TRD1-CR1, MjaXIP/S.MjaORF132P TRD2-CR2, and S.HspDL1ORF16625P TRD2-CR2
    Nucleotide Protein
    Heading Accession and Version