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    SPANXA2-OT1 SPANXA2 overlapping transcript 1 [ Homo sapiens (human) ]

    Gene ID: 619455, updated on 17-Sep-2024

    Summary

    Official Symbol
    SPANXA2-OT1provided by HGNC
    Official Full Name
    SPANXA2 overlapping transcript 1provided by HGNC
    Primary source
    HGNC:HGNC:31683
    See related
    Ensembl:ENSG00000277215 AllianceGenome:HGNC:31683
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    CXorf18
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

    See SPANXA2-OT1 in Genome Data Viewer
    Location:
    Xq27.2
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) X NC_000023.11 (141502849..141649939)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) X NC_060947.1 (139811490..139958661)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) X NC_000023.10 (140590843..140738069)

    Chromosome X - NC_000023.11Genomic Context describing neighboring genes Neighboring gene RBMX2 pseudogene 2 Neighboring gene NADH:ubiquinone oxidoreductase subunit B3 pseudogene 5 Neighboring gene sperm protein associated with the nucleus, X-linked, family member A1 Neighboring gene SPANX family member A2 Neighboring gene uncharacterized LOC645188 Neighboring gene MED14-independent group 3 enhancer GRCh37_chrX:140802566-140803765 Neighboring gene SPANX family member D Neighboring gene MAGE family member C3

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    General gene information

    Markers

    Other Names

    • SPANXA2 overlapping transcript 1 (non-protein coding)

    Clone Names

    • FLJ36186

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_037183.2 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC234774, AC240443
      Related
      ENST00000622372.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000023.11 Reference GRCh38.p14 Primary Assembly

      Range
      141502849..141649939
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060947.1 Alternate T2T-CHM13v2.0

      Range
      139811490..139958661
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)