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    LOC6572237 PAX3- and PAX7-binding protein 1 [ Drosophila mojavensis ]

    Gene ID: 6572237, updated on 10-May-2024

    Summary

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    Gene symbol
    LOC6572237
    Gene description
    PAX3- and PAX7-binding protein 1
    Locus tag
    Dmoj_GI23661
    See related
    EnsemblRapid:LOC6572237
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Drosophila mojavensis
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila
    Also known as
    GI23661; GI23661-PA; GI23661-PB; GI23661-PC; GI23661-PD
    Orthologs
    fruit fly all
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    Genomic context

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    See LOC6572237 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    102 current ASM1815372v1 (GCF_018153725.1) Unplaced Scaffold NW_025318726.1 (2959913..2964494)
    101 previous assembly dmoj_caf1 (GCF_000005175.2) Unplaced Scaffold NW_001979112.1 (3690831..3695404, complement)

    NW_025318726.1Genomic Context describing neighboring genes Neighboring gene nuclear envelope pore membrane protein POM 121 Neighboring gene C-terminal Src kinase Neighboring gene UFM1 specific ligase 1 Neighboring gene Kip1 ubiquitination-promoting complex subunit 1 Neighboring gene Guanylyl cyclase at 88E Neighboring gene uncharacterized LOC6572233 Neighboring gene uncharacterized LOC122756859

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Evolution of genes and genomes on the Drosophila phylogeny. Drosophila 12 Genomes Consortium, et al. Nature, 2007 Nov 8. PMID 17994087
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mRNA splicing, via spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in spliceosomal complex disassembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of U2-type post-mRNA release spliceosomal complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    PAX3- and PAX7-binding protein 1; uncharacterized protein LOC6572237
    Names
    Dmoj\GI23661
    Dmoj\GI23661-PA
    Dmoj\GI23661-PB
    Dmoj\GI23661-PC
    Dmoj\GI23661-PD
    dmoj_GLEANR_8785

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Drosophila mojavensis Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM1815372v1

    Genomic

    1. NW_025318726.1 Reference ASM1815372v1

      Range
      2959913..2964494
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015166290.3 → XP_015021776.1  PAX3- and PAX7-binding protein 1 isoform X1

      UniProtKB/TrEMBL
      B4KDK6
      Related
      XP_015021776.1, XM_015166290.3
      Conserved Domains (1) summary
      pfam07842
      Location:656 → 866
      GCFC; GC-rich sequence DNA-binding factor-like protein

    2. XM_015166291.3 → XP_015021777.1  uncharacterized protein LOC6572237 isoform X3

      UniProtKB/TrEMBL
      A0A0Q9WX82
      Related
      XP_015021777.1, XM_015166291.3

    3. XM_044007754.1 → XP_043863689.1  PAX3- and PAX7-binding protein 1 isoform X1

      UniProtKB/TrEMBL
      B4KDK6
      Related
      XP_043863689.1, XM_044007754.1
      Conserved Domains (1) summary
      pfam07842
      Location:656 → 866
      GCFC; GC-rich sequence DNA-binding factor-like protein

    4. XM_001998343.4 → XP_001998379.1  PAX3- and PAX7-binding protein 1 isoform X1

      See identical proteins and their annotated locations for XP_001998379.1

      UniProtKB/TrEMBL
      B4KDK6
      Related
      XP_001998379.1, XM_001998343.4
      Conserved Domains (1) summary
      pfam07842
      Location:656 → 866
      GCFC; GC-rich sequence DNA-binding factor-like protein

    5. XM_015166292.3 → XP_015021778.1  PAX3- and PAX7-binding protein 1 isoform X2

      UniProtKB/TrEMBL
      A0A0Q9WXA5
      Related
      XP_015021778.1, XM_015166292.3
      Conserved Domains (2) summary
      pfam07842
      Location:422 → 632
      GCFC; GC-rich sequence DNA-binding factor-like protein
      pfam15458
      Location:3 → 147
      NTR2; Nineteen complex-related protein 2
    Nucleotide Protein
    Heading Accession and Version

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