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    kis kismet [ Tribolium castaneum (red flour beetle) ]

    Gene ID: 659010, updated on 6-Jun-2024

    Summary

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    Gene symbol
    kis
    Gene description
    kismet
    Locus tag
    TcasGA2_TC014275
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Tribolium castaneum
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Coleoptera; Polyphaga; Cucujiformia; Tenebrionidae; Tenebrionidae incertae sedis; Tribolium
    Orthologs
    fruit fly all
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2024_04 current icTriCast1.1 (GCF_031307605.1) 5 NC_087398.1 (7266305..7285747, complement)
    103 previous assembly Tcas5.2 (GCF_000002335.3) Linkage Group LG5 NC_007420.3 (8314366..8333804)

    Chromosome 5 - NC_087398.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene folliculin-interacting protein 1 Neighboring gene glyoxylate/hydroxypyruvate reductase A Neighboring gene microRNA mir-965 Neighboring gene ribonuclease P protein subunit Rpp30 Neighboring gene ribosomal silencing factor RsfS-like protein, 312

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. BeetleBase in 2010: revisions to provide comprehensive genomic information for Tribolium castaneum. Kim HS, et al. Nucleic Acids Res, 2010 Jan. PMID 19820115, Free PMC Article
    2. The genome of the model beetle and pest Tribolium castaneum. Tribolium Genome Sequencing Consortium, et al. Nature, 2008 Apr 24. PMID 18362917

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP-dependent chromatin remodeler activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables chromatin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables histone binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in chromatin remodeling IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of gene expression IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of chromatin IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    chromodomain-helicase-DNA-binding protein 7
    Names
    AUGUSTUS-3.0.2_14275
    GLEAN_14275

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_031307605.1-RS_2024_04

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference icTriCast1.1 Primary Assembly

    Genomic

    1. NC_087398.1 Reference icTriCast1.1 Primary Assembly

      Range
      7266305..7285747 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_008195445.3 → XP_008193667.1  chromodomain-helicase-DNA-binding protein 7 isoform X3

      Conserved Domains (11) summary
      PHA03160
      Location:302 → 424
      PHA03160; hypothetical protein; Provisional
      smart00298
      Location:1435 → 1477
      CHROMO; Chromatin organization modifier domain
      COG0553
      Location:1368 → 2084
      HepA; Superfamily II DNA or RNA helicase, SNF2 family [Transcription, Replication, recombination and repair]
      cd00046
      Location:1604 → 1753
      DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
      pfam08430
      Location:823 → 926
      Forkhead_N; Forkhead N-terminal region
      pfam00271
      Location:1905 → 2020
      Helicase_C; Helicase conserved C-terminal domain
      pfam00385
      Location:1497 → 1552
      Chromo; Chromo (CHRromatin Organization MOdifier) domain
      pfam02948
      Location:223 → 383
      Amelogenin; Amelogenin
      pfam03529
      Location:175 → 259
      TF_Otx; Otx1 transcription factor
      pfam07533
      Location:3462 → 3502
      BRK; BRK domain
      pfam09309
      Location:978 → 1162
      FCP1_C; FCP1, C-terminal

    2. XM_064357166.1 → XP_064213236.1  chromodomain-helicase-DNA-binding protein 7 isoform X4

    3. XM_008195443.3 → XP_008193665.1  chromodomain-helicase-DNA-binding protein 7 isoform X1

      See identical proteins and their annotated locations for XP_008193665.1

      UniProtKB/TrEMBL
      D6WL05
      Conserved Domains (11) summary
      PHA03160
      Location:302 → 424
      PHA03160; hypothetical protein; Provisional
      smart00298
      Location:1435 → 1477
      CHROMO; Chromatin organization modifier domain
      COG0553
      Location:1368 → 2084
      HepA; Superfamily II DNA or RNA helicase, SNF2 family [Transcription, Replication, recombination and repair]
      cd00046
      Location:1604 → 1753
      DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
      pfam08430
      Location:823 → 926
      Forkhead_N; Forkhead N-terminal region
      pfam00271
      Location:1905 → 2020
      Helicase_C; Helicase conserved C-terminal domain
      pfam00385
      Location:1497 → 1552
      Chromo; Chromo (CHRromatin Organization MOdifier) domain
      pfam02948
      Location:223 → 383
      Amelogenin; Amelogenin
      pfam03529
      Location:175 → 259
      TF_Otx; Otx1 transcription factor
      pfam07533
      Location:3480 → 3520
      BRK; BRK domain
      pfam09309
      Location:978 → 1162
      FCP1_C; FCP1, C-terminal

    4. XM_008195446.3 → XP_008193668.1  chromodomain-helicase-DNA-binding protein 7 isoform X5

      UniProtKB/TrEMBL
      A0A139WGY5
      Conserved Domains (11) summary
      PHA03160
      Location:302 → 424
      PHA03160; hypothetical protein; Provisional
      smart00298
      Location:1435 → 1477
      CHROMO; Chromatin organization modifier domain
      COG0553
      Location:1368 → 2084
      HepA; Superfamily II DNA or RNA helicase, SNF2 family [Transcription, Replication, recombination and repair]
      cd00046
      Location:1604 → 1753
      DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
      pfam08430
      Location:823 → 926
      Forkhead_N; Forkhead N-terminal region
      pfam00271
      Location:1905 → 2020
      Helicase_C; Helicase conserved C-terminal domain
      pfam00385
      Location:1497 → 1552
      Chromo; Chromo (CHRromatin Organization MOdifier) domain
      pfam02948
      Location:223 → 383
      Amelogenin; Amelogenin
      pfam03529
      Location:175 → 259
      TF_Otx; Otx1 transcription factor
      pfam07533
      Location:3406 → 3446
      BRK; BRK domain
      pfam09309
      Location:978 → 1162
      FCP1_C; FCP1, C-terminal

    5. XM_008195444.3 → XP_008193666.1  chromodomain-helicase-DNA-binding protein 7 isoform X2

      UniProtKB/TrEMBL
      A0A139WGN7
      Conserved Domains (11) summary
      PHA03160
      Location:302 → 424
      PHA03160; hypothetical protein; Provisional
      smart00298
      Location:1435 → 1477
      CHROMO; Chromatin organization modifier domain
      COG0553
      Location:1368 → 2084
      HepA; Superfamily II DNA or RNA helicase, SNF2 family [Transcription, Replication, recombination and repair]
      cd00046
      Location:1604 → 1753
      DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
      pfam08430
      Location:823 → 926
      Forkhead_N; Forkhead N-terminal region
      pfam00271
      Location:1905 → 2020
      Helicase_C; Helicase conserved C-terminal domain
      pfam00385
      Location:1497 → 1552
      Chromo; Chromo (CHRromatin Organization MOdifier) domain
      pfam02948
      Location:223 → 383
      Amelogenin; Amelogenin
      pfam03529
      Location:175 → 259
      TF_Otx; Otx1 transcription factor
      pfam07533
      Location:3462 → 3502
      BRK; BRK domain
      pfam09309
      Location:978 → 1162
      FCP1_C; FCP1, C-terminal

    6. XM_064357165.1 → XP_064213235.1  chromodomain-helicase-DNA-binding protein 7 isoform X1

      UniProtKB/TrEMBL
      D6WL05
    Nucleotide Protein Strain
    Heading Accession and Version

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