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    cno canoe [ Tribolium castaneum (red flour beetle) ]

    Gene ID: 659853, updated on 10-May-2024

    Summary

    Gene symbol
    cno
    Gene description
    canoe
    Locus tag
    TcasGA2_TC014011
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Tribolium castaneum
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Coleoptera; Polyphaga; Cucujiformia; Tenebrionidae; Tenebrionidae incertae sedis; Tribolium
    Orthologs
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    Genomic context

    See cno in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    21
    Annotation release Status Assembly Chr Location
    RS_2024_04 current icTriCast1.1 (GCF_031307605.1) 5 NC_087398.1 (11248796..11301254, complement)
    103 previous assembly Tcas5.2 (GCF_000002335.3) Linkage Group LG5 NC_007420.3 (4099785..4150969)

    Chromosome 5 - NC_087398.1Genomic Context describing neighboring genes Neighboring gene Nostrin Neighboring gene 48 related 2 Neighboring gene transmembrane protein 35 Neighboring gene zinc finger protein 679

    Genomic regions, transcripts, and products

    General gene information

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables cell adhesion molecule binding IEA
    Inferred from Electronic Annotation
    more info
    PubMed 
    Process Evidence Code Pubs
    involved_in regulation of protein localization IEA
    Inferred from Electronic Annotation
    more info
    PubMed 
    involved_in signal transduction IEA
    Inferred from Electronic Annotation
    more info
    PubMed 
    Component Evidence Code Pubs
    located_in adherens junction IEA
    Inferred from Electronic Annotation
    more info
    PubMed 

    General protein information

    Preferred Names
    afadin
    Names
    AUGUSTUS-3.0.2_33046
    Afadin-like Protein
    GLEAN_14011
    GLEAN_14012

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_031307605.1-RS_2024_04

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference icTriCast1.1 Primary Assembly

    Genomic

    1. NC_087398.1 Reference icTriCast1.1 Primary Assembly

      Range
      11248796..11301254 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015979924.2XP_015835410.2  afadin isoform X2

    2. XM_015979923.2XP_015835409.2  afadin isoform X1

    3. XM_008194814.3XP_008193036.2  afadin isoform X6

    4. XM_015979927.2XP_015835413.2  afadin isoform X5

    5. XM_015979925.2XP_015835411.2  afadin isoform X3

    6. XM_015979926.2XP_015835412.2  afadin isoform X4