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    THAPSDRAFT_33330 dolichyl-phosphate beta-mannosyltransferase [ Thalassiosira pseudonana CCMP1335 ]

    Gene ID: 7447460, updated on 21-Dec-2023

    Summary

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    Gene symbol
    THAPSDRAFT_33330
    Gene description
    dolichyl-phosphate beta-mannosyltransferase
    Locus tag
    THAPSDRAFT_33330
    Gene type
    protein coding
    RNA name
    dolichyl-phosphate beta-mannosyltransferase
    RefSeq status
    PROVISIONAL
    Organism
    Thalassiosira pseudonana CCMP1335 (strain: CCMP1335)
    Lineage
    Eukaryota; Stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira
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    Genomic context

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    See THAPSDRAFT_33330 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    1
    Sequence:
    Chromosome: 4; NC_012067.1 (512185..512925)

    Chromosome 4 - NC_012067.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene probable dihydroorotase Neighboring gene serine hydroxymethyltransferase Neighboring gene hypothetical protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_012067.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism. Armbrust EV, et al. Science, 2004 Oct 1. PMID 15459382
    2. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables dolichyl-phosphate beta-D-mannosyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in GPI anchor biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in dolichol metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein O-linked mannosylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in endoplasmic reticulum membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Names
    dolichyl-phosphate beta-mannosyltransferase
    XP_002289205.1
    • involved in N-glycan biosynthesis

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_012067.1 Reference assembly

      Range
      512185..512925
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002289169.1 → XP_002289205.1  dolichyl-phosphate beta-mannosyltransferase [Thalassiosira pseudonana CCMP1335]

      See identical proteins and their annotated locations for XP_002289205.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      B8C1A1
      Conserved Domains (2) summary
      cd06442
      Location:5 → 242
      DPM1_like; DPM1_like represents putative enzymes similar to eukaryotic DPM1
      PLN02726
      Location:1 → 246
      PLN02726; dolichyl-phosphate beta-D-mannosyltransferase
    Nucleotide Protein
    Heading Accession and Version

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    Research Materials